Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq78 320 2e-82 seq137 123 3e-23 seq1753 89.7 5e-13 >seq78 Length=36107 Score = 320 bits (354), Expect = 2e-82 Identities = 555/795 (70%), Gaps = 14/795 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| ||||| ||||||||| ||| | || | ||||| || | ||| ||| Sbjct 13747 GAGCCGCTCCTGCGGGAGAACCCCGACCGCTATGTCCTCTTCCCAATCAAGCACCACGAC 13688 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAG-GCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 || ||| | |||||| |||| ||| || | | |||||| || |||||| | ||||| Sbjct 13687 ATCTGGAAGAAGTACAAGGAGGCGGAGAGCAGCAT-CTGGACAGTGGAGGAGATTGACCT 13629 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | ||| |||| || || |||||| |||||||| ||||| || ||||||||||| Sbjct 13628 GGGCAATGACATGACGGATTGGGAGAAGCTGAACGACGGGGAGCGGCACTTCATCAAGCA 13569 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||| |||| ||||| ||||| || || || ||||| ||||| |||| |||| || Sbjct 13568 CGTGTTGGCATTTTTTGCCGCAAGTGATGGGATCGTGCTGGAGAACCTGGCACAGCGGTT 13509 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | |||||||||| | |||| ||| |||||||| || || ||||||||||| || Sbjct 13508 CATGACGGAGGTGCAGTCACCGGAGGTGCGCTGCTTCTATGGGTTCCAGATCGCCATCGA 13449 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGG 116933 |||||||||||| || ||||| || || | ||||| ||| | || | | | | Sbjct 13448 GAACGTGCACTCTGAGATGTACTCTGTTCTGCTGGACACTTACATCACGGAC-ACAGTCG 13390 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 | ||| ||| ||||| |||||||| || || |||||| | | |||| || ||| Sbjct 13389 AAAAGGACCGCTTGTTTCACGCCATCTCAACTATCCCGTGCATTGAGAAGAAAGCTAAGT 13330 Query 116994 GGGC-GCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 |||| || | |||||| | |||| ||| || | |||||||| || || || Sbjct 13329 GGGCAACTAAG-TGGATCCGCAGCAGCGAG---TGTTTTGCTGAGCGCCTTGTCGCGTTT 13274 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| ||||||| || ||| ||| ||| | || ||||||||||| Sbjct 13273 GCCGCTGTTGAGGGCATCTTCTTCTCCGGCTCGTTCTGCGCGCTGTTCTGGCTCAAGAAG 13214 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || ||||||||||| || ||||| |||||||| || ||||| || | |||||||| ||| Sbjct 13213 CGTGGCCTCATGCCAGGGCTGACGTTCAGCAATGAACTCATTTCGCGCGACGAGGGCCTG 13154 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTC---AAGCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || |||||||| || |||| | | || || | || ||| | | |||| | Sbjct 13153 CACACTGACTTTGCATGCCTGCTATACGAAAAACACATTGTCCAG-AAGCTTCCGCGTGA 13095 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 ||| | |||||| || || ||| | | ||||||| ||| || ||| || Sbjct 13094 GCGTATTCAAGAGATCATCTGTGAGGCGATGGAGATCGAGCGTGAGTTCATCTGCGATGC 13035 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGT 117348 | | |||||||| ||| | || | || | || ||||||| |||||| |||||||| Sbjct 13034 GATCCCGGTGCGCCTGATTGGGATGAACTCGGACCTGATGTCGACATACATTGAGTTCGT 12975 Query 117349 CGCCGACAGGCTGCT 117363 || ||| ||||||| Sbjct 12974 TGCGGACCGGCTGCT 12960 >seq137 Length=29121 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || ||||| |||||||| || ||| | |||| || || || Sbjct 22508 AAATATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGC 22567 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | | |||| | |||| || |||| ||||| ||||||||||| ||| Sbjct 22568 TAGTGACACCATTGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGG 22626 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| ||||| || || | ||||| || |||| Sbjct 22627 ACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGAGGGCCGCACGCTGGCGGACT 22686 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| ||||||||||| | |||||||| || ||| Sbjct 22687 ACAATATCCAGAAGGAATCGACGCTGCACCTTGTG 22721 >seq1753 Length=2219 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| |||||||| || ||| | |||| || || |||| | Sbjct 2097 ATGCAAATTTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 2156 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| ||||||||||| ||||||| Sbjct 2157 GACACCATTGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 2215 Query 40809 GCA 40811 ||| Sbjct 2216 GCA 2218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200710070960