Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq137 86.0 5e-12 >seq137 Length=29121 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || || || || || || ||||| || || ||||| || || Sbjct 22721 CACAAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGCCAGCGTGCGGCCCTCTTC 22662 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| || | |||||| || || || |||||||||||||| Sbjct 22661 GAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 22602 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | |||||| | ||| ||||||| | | ||| || Sbjct 22601 AATCTTCGCCTTCACGTTCTCAATGGTGTCACTAGCCTCCACCTCGAGCGCGATCGTCTT 22542 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 22541 GCCCGTCAGCGTCTTCACAAAGATCTGCAT 22512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815220138732