Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq137 125 6e-24 seq1753 84.2 2e-11 >seq137 Length=29121 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| |||||||| || |||||||| ||| ||| | || || || || Sbjct 22715 GTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGCCAGCGTGCGGCCCTCTTCGAGCTG 22656 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| || ||| ||||| || || | |||||||||||| ||| || Sbjct 22655 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTT 22596 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | | |||||||||| | | |||||||||||||| Sbjct 22595 CGCCTTCACGTTCTCAATGGTGTCACTAGCCTCCACCTCGAGCGCGATCGTCTTGCCCGT 22536 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| |||||||||||||| ||||| || Sbjct 22535 CAGCGTCTTCACAAAGATCTGCATATT 22509 >seq1753 Length=2219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45214 CTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCT 45273 ||| ||||| || || | |||||||||||| ||| || ||| || | | | | | Sbjct 2219 CTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCAATGGT 2160 Query 45274 GTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTG 45333 ||| | |||||||||| | | ||||||||||||||||| |||||||| || ||||| Sbjct 2159 GTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATTTG 2100 Query 45334 CATGTTGCC 45342 |||| |||| Sbjct 2099 CATGATGCC 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395061376195291