Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq78 264 1e-65 seq62 199 4e-46 >seq78 Length=36107 Score = 264 bits (292), Expect = 1e-65 Identities = 595/878 (68%), Gaps = 26/878 (3%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGA-AGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||||| ||||| | |||||| |||| || |||| | | | |||| || || || | || Sbjct 13690 GACATCTGGAAGAAGTACAAGGAGGCGGAGAGCAGCATCT-GGACAGTGGAGGAGATTGA 13632 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 |||| || || ||| |||||||| || || || ||| | | || || || Sbjct 13631 CCTGGGCAATGACATGACGGATTGGGAGAAGCTGAACGACGGGGAGCGGCACTTCATCAA 13572 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||||||||||| ||||| |||||| ||||| || || ||||| ||| | || Sbjct 13571 GCACGTGTTGGCATTTTTTGCCGCAAGTGATGGGATCGTGCTGGAGAACCTGGC--ACAG 13514 Query 57746 ATTTTCACAA--GAAGTGCAAGTGAC-GGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 |||| | || ||||| || || ||||| | | ||||| || || || || | || Sbjct 13513 CGGTTCATGACGGAGGTGCA-GTCACCGGAGGTGCGCTGCTTCTATGGGTTCCAGATCGC 13455 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA 57862 ||| || |||||||| || || ||||| || | || | || || ||| | | ||||| Sbjct 13454 CATCGAGAACGTGCACTCTGAGATGTACTCTGTTCTGCTGGACACTTACATCACGGACAC 13395 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGG 57921 | ||| || | |||| |||| ||| ||| || |||| | || | ||||| | Sbjct 13394 AGTCGAAAAGGACCGCTTGTTTCACGCCATCTCAACTAT-CCCGTGCATTGAGAAGAAAG 13336 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGC-GCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 | ||||| ||| || ||||| ||| || | | || || ||| | || || Sbjct 13335 CTAAGTGGGCAACTAAGTGGATCCGCAGCAGCGAGTGT----TTTGCTGAGCGCCTTGTC 13280 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGAT 58039 ||||| ||||| || || || || ||||| || ||| || |||| | | || ||| | Sbjct 13279 GCGTTTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCTCGTTCTGCG-CGCTGTTCTGGCT 13221 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || ||||| ||||| || |||||||| ||||| || | || ||||||||||| Sbjct 13220 CAAGAAGCGTGGCCTCATGCCAGGGCTGACGTTCAGCAATGAACTCATTTCGCGCGACGA 13161 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTAC---TCTCACATTGTCAATAAACCGAC 58156 ||| || || ||||| ||||| ||||| | ||| ||||||||| | || | | Sbjct 13160 GGGCCTGCACACTGACTTTGCATGCCTGCTATACGAAAAACACATTGTCCAGAAGCTTCC 13101 Query 58157 GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 ||| || || || || || ||| |||||| | | |||||| |||||| || Sbjct 13100 GCGTGAGCGTATTCAAGAGATCATCTGTGAGGCGATGGAGATCGAGCGTGAGTTCATCTG 13041 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| || | |||||| | || | || |||||| || ||||||| | |||||||| Sbjct 13040 CGATGCGATCCCGGTGCGCCTGATTGGGATGAACTCGGACCTGATGTCGACATACATTGA 12981 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA---GAGCGTCATTACAACACGAA 58333 ||| ||||| ||| | | |||||| | | ||| ||||| | ||||| |||| Sbjct 12980 GTTCGTTGCGGACCGGC---TGCTCGTGGCGCTCGGAAACGAGCGGTACTACAAGTCGAA 12924 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393 || ||||| ||||| ||| | |||||||||| |||| ||||| ||||| || || || Sbjct 12923 GAACCCGTTCGATTTCATGGAGATGATCTCGCTGCAGGGAAAGACGAACTTCTTTGAGAA 12864 Query 58394 aaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCG 58431 || || | || || || || ||||||||||||| Sbjct 12863 GAAGGTCGGTGAGTACCAGAAGGCAGGCGTGATGAGCG 12826 >seq62 Length=39022 Score = 199 bits (220), Expect = 4e-46 Identities = 552/838 (66%), Gaps = 10/838 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || || ||||| ||||| || || | ||| | |||| ||| || |||||||| Sbjct 15029 GCAATTGACGCAAGGTTGCACACTGCGATCTCTTTCGGAGACGAGTATTCGACAATTTCC 15088 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTTCGATTGCA 23139 || || || || |||||| ||| || | || ||||||| | || | | || || Sbjct 15089 GTGCAAAGGTTTGAACACTTGATCACACCAATGTTATTCTGGTTCGACTTCTTG-TTACA 15147 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | |||||||| | || | | ||| |||||||| | ||||| ||| | ||| || Sbjct 15148 TGCGTCCTTGTACACCAGGAAAGGCACACCCGTCTCCATCTGCGTCTCAAGGATGGCAAA 15207 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 ||||| ||| || | | | ||| | || || |||||| | ||| Sbjct 15208 CCACACTTCCTGCGCCTTCATTGTTTTCACACCGCGCCCCTCACTTTCGTACCGCTCGTA 15267 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGAT-TGCATCGGACACA 23318 ||| | || ||| ||||| || ||| || || |||| | || | ||| || Sbjct 15268 CAATTTCTTGAAATCGTTGCCGTAGCAATCGCTCAACCCAGGCGCTGTGTGT-GGATCCA 15326 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || |||| || | ||||| || || ||| ||||| || || | ||| || | Sbjct 15327 TAAGCGTCCAGTTTTCATGCTTTTCCACACGCTCCATGAAAAGGTCAGGAACCCACAGCG 15386 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || || || || |||| || || || || || ||||| || | | | || Sbjct 15387 CGTAGAAGAGATCACGCGCACGCATATCTTCCTTACCCGTATTCTTCTTAAGAAGAAGAA 15446 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||| || | ||| ||||||| ||||| ||||||| || | ||| ||| | | || Sbjct 15447 AGTTCATGATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCACCCTTGCGCCTAC 15506 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 |||||| ||||| || ||||| ||||| || || |||| | |||||| ||||| || | Sbjct 15507 CGCCGCCTTGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACAAGGC 15566 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTC---GAACGTTGTGAA 23615 ||||||| | ||| | || | || || | ||| || | | | |||||||| Sbjct 15567 CGTTGGATGTACCG--TTCGTTC-CCGCAATATAACTCCCGGCACAGCGGATGTTGTGAA 15623 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 |||||| || || || || ||||||| || || ||||| || || || ||||||| Sbjct 15624 CGTGGATGCCGATACCACCAGCCGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGT 15683 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 |||||||||| |||||||| || | || || | ||| || || ||| || | | Sbjct 15684 AGATGCCCTCAATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCTCATCTGTGGTA 15743 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 || || | || |||||||||||| | |||||||||||| | ||| ||||| Sbjct 15744 CTGGTGTGCCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATAT 15803 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCG 23853 || ||| || || | || | ||||| | ||||| ||||||||||| || || Sbjct 15804 AATCGTATGTTTCCTTCACGTGTTGCATGTCAGCACCGTGAATACCGATGGCAACACG 15861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750402558320