Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1674 150 2e-31 >seq1674 Length=2441 Score = 150 bits (166), Expect = 2e-31 Identities = 302/445 (68%), Gaps = 2/445 (0%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 |||||||| ||||| || | ||||||| ||| ||| || ||||||||| ||| Sbjct 2312 CGGAAACGCCCGCGGCACCCGCTGCAGCTGCTCCAGGCAGGGCTCCACGTGGTTGGAGTA 2253 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| || || || | |||||||| | || ||||| || |||| | | || Sbjct 2252 CACGTGCGCATCGCCGAGCGTGTGCACCAGCTCGCCCGGCCGCAATCCCGCCGCCTTCGC 2193 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 || || |||||| || ||||| |||||||| ||||| || |||||||||||||| Sbjct 2192 CATGAGGATCGTCAGCAGCGCGTACGACGCGATGTTGAACGGCACGCCGAGGCCCATGTC 2133 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 | || | |||||||||| |||||| ||||| || | |||| ||||| | Sbjct 2132 GCACGAGCGCTGGTACAGCATGCAGGAGAGCTCGCCGTTGTTCGCGTAGAACTGCGCGAG 2073 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC-GGGGTTCCACGCGCACATAA 21186 | ||| || || ||||| ||||| |||| | | ||| |||||||||||| | | Sbjct 2072 GAGGTGGCACGGTGGGAGCGCCAT-CGCGTGCAGCGCGCACGGGTTCCACGCGGTGAGTA 2014 Query 21187 CGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCA 21246 |||||||| || | ||| | || | || || | | || | |||||| | Sbjct 2013 TCATGCGCCGGTCATCGGGGTTCGTGCGCAGCGTCTCTACGATCTGCCGGATCTGGTCGA 1954 Query 21247 CCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACT 21306 || | || ||||| | ||||| || | ||||| |||| || || |||| ||||| Sbjct 1953 TGCCATTCCCGGAGTAGTCGTCGTCGTGCCGCGTGTACGCCGCGCCGAAGTGTCGCCACT 1894 Query 21307 GGAACCCGTACACCGGCCCCAGATC 21331 |||| ||||||||||| || || || Sbjct 1893 GGAAGCCGTACACCGGGCCAAGGTC 1869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427761031984080