Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq78 154 2e-32 >seq78 Length=36107 Score = 154 bits (170), Expect = 2e-32 Identities = 384/575 (67%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| || || |||||| |||||||| | ||| ||||| ||| ||||| || Sbjct 13137 CATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGC 13196 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||||||||| || ||||| || | | |||| || || || || ||||| Sbjct 13197 CCTGGCATGAGGCCACGCTTCTTGAGCCAGAACA-GCGCGCAGAACGAGCCGGAGAAGAA 13255 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 ||| || || || |||||||| || ||||| | ||| || ||| ||||| | || Sbjct 13256 GATGCCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGCTGCGGAT 13315 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||||| ||||| | || ||||| | | || || || ||| ||||| | ||| Sbjct 13316 CCACTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAAA 13375 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 | || ||||| | || | | ||||| || | || || | ||||| || Sbjct 13376 CAAGCGGTCCTTTTCGACTGTGTCCGTGATGTAAGTGTCCAGCAGAACAGAGTACATCTC 13435 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT-CGGTAATCT 50317 || || | ||| || ||||| ||||| || || ||||| || | ||| |||| | || Sbjct 13436 AGAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGAAGCAGCGCACCTCCGGTGA-CT 13494 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 |||| || || || || | || | || || ||| || || ||||| || |||| Sbjct 13495 GCACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCCATCACTTGCGGCAA 13554 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437 |||| ||||| || || || || || || || | | || || | |||||| Sbjct 13555 AAAATGCCAACACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCTTCTCCCAATCCG 13614 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC-CTCTGCCTTTTTA 50496 | || || || | || | || |||||||||| | ||| ||| ||| |||| || Sbjct 13615 TCATGTCATTGCCCAGGTCAATCTCCTCCACTGTCC-AGATGCTGCTCTCCGCCTCCTTG 13673 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 ||| | ||||||||||| || | | ||||||||| Sbjct 13674 TACTTCTTCCAGATGTCGTGGTGCTTGATTGGGAA 13708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718243023128440