Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq78 104 3e-17 >seq78 Length=36107 Score = 104 bits (114), Expect = 3e-17 Identities = 375/576 (65%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 ||||| || || |||||| ||||| || | ||| | ||| ||| ||||| || Sbjct 13137 CATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGC 13196 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||||||||| || ||||| || | | |||| || || || || ||||| Sbjct 13197 CCTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGCG-CGCAGAACGAGCCGGAGAAGAA 13255 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| || || || || ||||| || | ||| | ||| || ||| | ||| | || Sbjct 13256 GATGCCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGCTGCGGAT 13315 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||||| ||||| | || ||||| | | || || || ||| ||||| | ||| Sbjct 13316 CCACTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAAA 13375 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 | || ||||| | || | | || || || | || || | ||||| || Sbjct 13376 CAAGCGGTCCTTTTCGACTGTGTCCGTGATGTAAGTGTCCAGCAGAACAGAGTACATCTC 13435 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT-CGGTAACCT 42422 || || | ||| || ||||| ||||| || || ||||| || | ||| |||| | || Sbjct 13436 AGAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGAAGCAGCGCACCTCCGGTGA-CT 13494 Query 42423 GTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAA 42482 | || || || || || | || | || || ||| || || ||||| || |||| Sbjct 13495 GCACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCCATCACTTGCGGCAA 13554 Query 42483 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCA 42541 |||| ||||| || || || || || | || ||| ||| | || | |||||| Sbjct 13555 AAAATGCCAACACGTGCTTGATGAAGTGCCGCTC-CCCGTCGTTCAGCTTCTCCCAATCC 13613 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT-TCTGCCTTTTT 42600 | || || || | || | || || || |||| | ||| |||| || |||| || Sbjct 13614 GTCATGTCATTGCCCAGGTCAATCTCCTCCACTGTCC-AGATGCTGCTCTCCGCCTCCTT 13672 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 ||| | |||||||| || || | | |||||||| Sbjct 13673 GTACTTCTTCCAGATGTCGTGGTGCTTGATTGGGAA 13708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671115114491960