Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq78 134 2e-26 >seq78 Length=36107 Score = 134 bits (148), Expect = 2e-26 Identities = 387/584 (66%), Gaps = 16/584 (3%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || |||| | | || ||||| ||| | | |||||| |||| || | | | Sbjct 13712 CCTCTTCCCAATCAAGCACCACGACATCTGGAAGAAGTACAAGGAGGCGGAGAGCAGCAT 13653 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 ||||| || || ||| | || ||| ||| ||| || |||||||||| | ||| Sbjct 13652 CTGGACAGTGGAGGAGATTGACCTGGGCAATGACATGACGGATTGGGAGAAGC---TGAA 13596 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| | ||||| || ||||||| ||||| || Sbjct 13595 CGACGGGGAGCGGCACTTCATCAAGCACGTGTTGGCATTTTTTGCCGCAAGTGATGGGAT 13536 Query 125174 CGTCAACGACAATCTGTTGACA-CGATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTC 125230 ||| || || ||| ||| || ||| ||| || || || | |||||| Sbjct 13535 CGTGCTGGAGAACCTGGC-ACAGCGGTTCATGACGGAGGTG--CAGTCACCGGAGGTGCG 13479 Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||| || || ||||| ||| || |||||||||||||| || ||||||||| || Sbjct 13478 CTGCTTCTATGGGTTCCAGATCGCCATCGAGAACGTGCACTCTGAGATGTACTCTGTTCT 13419 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTC-TTTAACGCAATCGACA 125349 | | |||| ||||| | || | || ||| ||| ||| |||| ||| | Sbjct 13418 GCTGGACACTTACAT-CACGGACACAGTCGAAAAGGACCGCTTGTTTCACGCCATCTCAA 13360 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | |||| || || || ||| | |||| | | ||||||| | | ||| Sbjct 13359 CTATCCCGTGCATTGAGAAGAAAGCTAAGTGGGCAACTAAGTGGATCCGCAGCAGCGAGT 13300 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 || || || | || || || || ||||| || |||||||||||||| || || | Sbjct 13299 GTTTT---GCTGAGCGCCTTGTCGCGTTTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCT 13243 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| |||| | | || |||||||||||||| || |||||||| || |||||| ||| Sbjct 13242 CGTTCTGCGCGC-TGTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGGCTGACGTTCAGC 13184 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || || | || || || ||||||||||| ||| ||||||||| Sbjct 13183 AATGAACTCATTTCGCGCGACGAGGGCCTGCACACTGACTTTGC 13140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741032605237960