Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq78 136 5e-27 >seq78 Length=36107 Score = 136 bits (150), Expect = 5e-27 Identities = 380/575 (66%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 ||||| || || |||||| |||||||| | ||| ||||| ||| ||||| || Sbjct 13137 CATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGC 13196 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||||||||| || ||||| || | | ||| || || || |||||| Sbjct 13197 CCTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAG 13256 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33483 || || || || || ||||| || | ||| | ||| || ||| ||||| | ||| Sbjct 13257 ATGCCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGCTGCGGATC 13316 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 ||||| ||||| | || ||||| | | || || || ||| ||||| | ||| Sbjct 13317 CACTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAAAC 13376 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 | || ||||| | || | | ||||| || | || || | ||||| || Sbjct 13377 AAGCGGTCCTTTTCGACTGTGTCCGTGATGTAAGTGTCCAGCAGAACAGAGTACATCTCA 13436 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT-CGGTAATCTG 33662 || || | ||| || ||||| ||||| || || ||||| || | ||| |||| | ||| Sbjct 13437 GAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGAAGCAGCGCACCTCCGGTGA-CTG 13495 Query 33663 TACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33722 || || || || || | |||| || || ||| || || ||||| || ||||| Sbjct 13496 CACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCCATCACTTGCGGCAAA 13555 Query 33723 AAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCAT 33781 ||| ||||| || || || || || | || | | || | || || | |||||| Sbjct 13556 AAATGCCAACACGTGCTTGATGAAGTGCCGCTCCCCGTCGT-TCAGCTTCTCCCAATCCG 13614 Query 33782 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC-CTCTGCCTTTTTA 33840 | || || || | || | || |||||||||| | ||| ||| ||| |||| || Sbjct 13615 TCATGTCATTGCCCAGGTCAATCTCCTCCACTGTCC-AGATGCTGCTCTCCGCCTCCTTG 13673 Query 33841 TACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||| | ||||||||||| | | | ||||||||| Sbjct 13674 TACTTCTTCCAGATGTCGTGGTGCTTGATTGGGAA 13708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622924843982360