Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq62 170 5e-37 >seq62 Length=39022 Score = 170 bits (188), Expect = 5e-37 Identities = 578/883 (65%), Gaps = 27/883 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 |||||||| ||||||||||| | |||||||| || ||||| || | | || | | Sbjct 15885 GAACGCCCACAGCATATGTTTCTTCGTGTTGCCATCGGTATTCACGGTGCTGACATGCAA 15826 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG---TATTCACGCACGCCACGCCA 363564 || || ||||| ||| | || || || ||| || | || |||||||| || || Sbjct 15825 CACGTGAAGGAAAC--ATACGATTATATGT-CTCTTGGCTTCTTTACGCACGCAACACCG 15769 Query 363565 ACAATGTACAATGCTGGAACTC--GTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 ||| ||| ||| ||||| || | ||| ||||||||| |||||||| ||| | || Sbjct 15768 ACACTGTTCAACGCTGGCACACCAGTA--CCACAGATGAGCTCTTGCTTCCTTGTTGCAA 15711 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 || ||| || ||| ||||| |||| ||||| || ||| | || || | || || Sbjct 15710 TGCGGGATGACAGCATTGAGGGCATCTACGACACCCTAAAGCAGTGCGCCATAATCAGCA 15651 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGA--TCCACAATGTTCG-TGCACAGAACAGTTACA 363739 | || || || || | | ||| | | ||||| | || || | | ||||| | Sbjct 15650 AATCGGCTGGTGGTATCG--GCATCCACGTTCACAACATCCGCTGTGCCG-GGAGTTATA 15594 Query 363740 TTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 || |||| | | | ||| || || || || || || ||||| ||||||| | ||| Sbjct 15593 TT-GCGGGAACGAACGGTACATCCAACGGCCTTGTGCCAATGCTACGTGTGTGGAATAAT 15535 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 || || | || || || || || || || | |||||| || ||| | || || || || Sbjct 15534 ACGGCACGTTATGTGGATCAAGGCGGCGGTAGGCGCAAGGGTGCGATCGCAATTTACCTA 15475 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 |||||| |||| ||| || | | |||||| || ||| || ||||| || || Sbjct 15474 GAGCCTTGGCATGGCGACATCATGAACTTTCTTCTTCTTAAGAAGAATACGGGTAAGGAA 15415 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 || ||||||| |||||||| ||||| || || |||||| |||||| ||| ||| |||| Sbjct 15414 GATATGCGTGCGCGTGATCTCTTCTACGCGCTGTGGGTTCCTGACCTTTTCATGGAGCGT 15355 Query 363979 GTGG--AGGCAGGTAAGAATTGGTCACTCTTTTG--CCCACACGAATGTCCAGGTCTTTC 364034 |||| | ||| | | || ||| || ||| || |||||| | || || | Sbjct 15354 GTGGAAAAGCA--TGAAAACTGG--ACGCTTATGGATCCACACACAGCGCCTGGGTTGAG 15299 Query 364035 CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC 364094 |||| | || |||| | | ||||| ||| ||| ||||| | Sbjct 15298 CGATTGCTACGGCAACGATTTCAAGAAATTGTACGAGCGGTACGAAAGTGAGGGGCGCGG 15239 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 | || ||||| || ||| | | |||||||||||| | || ||||||| ||||| Sbjct 15238 TGTGAAAACAATGAAGGCGCAGGAAGTGTGGTTTGCCATCCTTGAGACGCAGATGGAGAC 15179 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 || || | || ||||||| || | || ||| ||||| |||||| | || | Sbjct 15178 GGGTGTGCCTTTCCTGGTGTACAAGGACGCATGTAACAAGAAGTCGAACCAGAATAACAT 15119 Query 364215 TGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 |||| || || ||||| || || || ||| | |||||| | |||| | || Sbjct 15118 TGGTGTGATCAAGTGTTCAAACCTTTGCACGGAAATTGTCGAATACTCGTCTCCGAAAGA 15059 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTT 364317 || || || || ||||||||||| || || || || |||||| Sbjct 15058 GATCGCAGTGTGCAACCTTGCGTCAATTGCTCTGCC-GCGTTT 15017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303305656545122