Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq78 111 1e-19 >seq78 Length=36107 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 46083 TATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGC 46142 ||| |||||| | |||||| | | ||||| | ||||||||| ||||||| | Sbjct 13358 TATCCCGTGCATTGAGAAGAAAGCTAAGTGGGCAACTAAGTGGATCCGCAGCAGC---GA 13302 Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA- 46201 | ||| || ||||| | || || ||||| ||| |||||| |||| || || ||| Sbjct 13301 GTGTTTTGCTGAGCGCCTTGTCGCGTTTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCTC 13242 Query 46202 GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 ||| ||| || | || | |||| | ||| ||||||| || |||||||| |||| Sbjct 13241 GTTCTGC-GCGCTGTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGGCTGACGTTCAGCA 13183 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 | || || || |||||||||||||||||||| || |||||||| || || Sbjct 13182 ATGAACTCATTTCGCGCGACGAGGGCCTGCACACTGACTTTGCATGCCT 13134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471995860640640