Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq78 140 4e-28 >seq78 Length=36107 Score = 140 bits (154), Expect = 4e-28 Identities = 400/604 (66%), Gaps = 11/604 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| || || | || ||||| || || || | ||||||||||| || | Sbjct 13136 GCATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAG 13195 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaaaa 93209 ||||| | || || || ||||||||||| || | | ||| ||| | || || || | Sbjct 13196 CCCTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGCG-CGCAGAACGAGCCGGAGAAGA 13254 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | || || || || || ||||| || |||| || || |||||| || | |||| Sbjct 13255 AGATGCCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCG---CTGCTGC 13311 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 |||||| || ||||| | ||||| |||| ||| || || | ||| ||| |||| Sbjct 13312 GGATCCACTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGT 13371 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGT-ATGTATGTATCGATTAACAGAGAATAC 93388 ||| | | || ||| | | || ||| ||||| || || | | | ||| ||| Sbjct 13372 GAAACAAGCGGTCCTTTTCGACTGTGTC-CGTGATGTAAGTGTCCAGCAGAACAGAGTAC 13430 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC-TAGCTTCCGT 93447 || ||||| || || ||||| || || || ||||| || ||||| || | | || | || Sbjct 13431 ATCTCAGAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGAAGCAGCGCACCTCCGGT 13490 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 || |||||| || || | || | | || || || || || ||||| ||| Sbjct 13491 GA-CTGCACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCCATCACTTGC 13549 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 |||||||| ||||| | ||||| || || || ||| | || || ||||| ||||| Sbjct 13550 GGCAAAAAATGCCAACACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCTTCTCCCA 13609 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT-TCTGCTT 93626 ||| | | || || || || | || || || |||| | | | |||| || || | Sbjct 13610 ATCCGTCATGTCATTGCCCAGGTCAATCTCCTCCACTGTCC-AGATGCTGCTCTCCGCCT 13668 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGT 93686 |||||| | | ||| ||||| || | | ||||| || | |||| | || | |||| Sbjct 13669 CCTTGTACTTCTTCCAGATGTCGTGGTGCTTGATTGGGAAGAGGACATAGCGGTCGGGGT 13728 Query 93687 TATC 93690 | || Sbjct 13729 TCTC 13732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556840815658040