Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq78 145 2e-29 seq828 105 1e-17 >seq78 Length=36107 Score = 145 bits (160), Expect = 2e-29 Identities = 560/861 (65%), Gaps = 38/861 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | ||| |||| ||| ||||| | ||||||||| ||||| ||||| | Sbjct 12867 TCAAAGAAGTTCGTCTTTCCCTGCAGCGAGATCATCTCCATGAAATCGAACGGGTTCTTC 12926 Query 251623 GCATTGTACT---GCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679 | ||||| | ||| | | || || || |||| | ||||| || || ||||| Sbjct 12927 GACTTGTAGTACCGCTCG---TTTCCGAGCGCCACGAGCAGCCGGTCCGCAACGAACTCA 12983 Query 251680 AGATACTGTCC-CATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACA 251738 | || |||| |||||| || |||||||| ||||||| || || || || || || Sbjct 12984 ATGTA-TGTCGACATCAGGTCCGAGTTCATCCCAATCAGGCGCACCGGGATCGCATCGCA 13042 Query 251739 GATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGA 251798 |||||| || ||| | | | ||||| | || | | | | | | | Sbjct 13043 GATGAACTCACGCTCGATCTCCATCGCCTCACAGATGATCTCTTGAATACGCTCACGCGG 13102 Query 251799 CAGCTTGTTCTCCA---GCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||||| | | | | ||| ||| || || |||| | |||||| ||||| Sbjct 13103 AAGCTTCTGGACAATGTGTTTTTCGTATAGCAGGCATGCAAAGTCAGTGTGCAGGCCCTC 13162 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTG 251913 |||||| |||| || ||| | || | ||| || ||||| | ||||| ||| || Sbjct 13163 GTCGCGCGAAATGAGTTCATTG--CTGAACGTCAGCCCTGGCATGAGGCCACGCTTCTTG 13220 Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCA 251973 |||||||| | ||||| || || || ||||| | | ||||| ||| | | || Sbjct 13221 AGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATGCCCTCAACAGCGGCAAACGCG 13280 Query 251974 ACAAGGCGCTCAGCAAACGACTTG-TCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 ||||||||||||||||| ||| | | ||||| | |||| |||||| || || Sbjct 13281 ACAAGGCGCTCAGCAAAACACTCGCTGCTGCG-GATCCACTTAGTTGCCCACTTAGCTTT 13339 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCATCGT 252091 ||| ||| ||||| ||| ||| || | ||| | || | ||| ||| | || Sbjct 13340 CTTCTCAATGCACGGGATAGTTGAGATGGCGTGAAACA-AGCGGTCCTTTTCGACTGTGT 13398 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| | || ||||| | |||||||||||| || || | | ||| || | Sbjct 13399 CCGTGATGTAAGTGTCCAGCAGAACAGAGTACATCTCAGAGTGCACGTTCTCGATGGCGA 13458 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACT-----TCCGT--GGAAAAG 252204 ||||| | |||||| || |||| | |||||||| ||||| ||| | Sbjct 13459 TCTGGAACCCATAGA--AGCAGCGC---ACCTCCGGTGACTGCACCTCCGTCATGAACCG 13513 Query 252205 TTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAATGGT 252263 || ||| | |||||||| ||| || ||||| || | ||||| || ||||| | | Sbjct 13514 CTG--TGCCAGGTTCTCCAGCACGATCCCATCACTTGCGGCAAAAAATGCCAA-CACGTG 13570 Query 252264 CTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATT 252323 |||||||||||| ||||| ||||||| ||||| || ||| || | ||||| | Sbjct 13571 CTTGATGAAGTGCCGCTCCCCGTCGTTCAGCTTCTC---CCAATCCGTCATGTCATTGCC 13627 Query 252324 CAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACAC 252383 ||| || || ||||| ||||||| || | |||||| ||||||| | | | Sbjct 13628 CAGGTCAATCTCCTCCACTGTCCAGATGCTGCTCTCCGCCTCCTTGTACTTCTTCCAGAT 13687 Query 252384 ATCAGGGTACTTGATTGGGAA 252404 || ||| |||||||||||| Sbjct 13688 GTCGTGGTGCTTGATTGGGAA 13708 >seq828 Length=7585 Score = 105 bits (116), Expect = 1e-17 Identities = 214/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGA-TGTGGAGCGTTCTATTCC 218576 || ||| | ||||||||||| ||||| ||||| | ||| ||| |||||||| || || Sbjct 4900 GAGTTCGTTGACAAGGAGCTTATTCTCTTCTCAGTGGCTGACTGT-GAGCGTTCCATCCC 4958 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 ||||| |||||||| || ||||| ||||| |||||| | ||| || | || ||||| Sbjct 4959 GAGCGTTGTGGATGGGCTGAAGCCCGGACAGCGCAAGATCATGTTTTCCTCGTTTAAGCG 5018 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||||| | | |||||||| | || | | ||||| || || || | | Sbjct 5019 CAACCTCACGCGATCCATTAAGGTGGTGCAACTAGCCGGTTACGTCTCTGAGCACGCGGC 5078 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 ||||| ||||| |||||| ||| | |||| || ||| | ||||| |||| || Sbjct 5079 GTACCACCACGGCGAGCAGTCGCTGGTGCAGACCATCGTTGGCCTCGCACAAGACTTCGT 5138 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCC-CCA--ACGGTCAGTTTGGTTCTCGTCTATT 218813 |||| || || || |||||||| || |||||||||||||| | || || Sbjct 5139 GGGCTCGAATAATGTG---CCGCTGCTCCAGCAGGACGGTCAGTTTGGTACACGGCTGCA 5195 Query 218814 GGGTGGAAAGGA 218825 ||| || ||||| Sbjct 5196 GGGCGGCAAGGA 5207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027798991344511