Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq155 149 1e-30 seq78 123 5e-23 seq828 102 2e-16 seq1853 91.5 3e-13 seq724 91.5 3e-13 seq139 91.5 3e-13 >seq155 Length=27196 Score = 149 bits (164), Expect = 1e-30 Identities = 384/585 (66%), Gaps = 0/585 (0%) Strand=Plus/Minus Query 268159 GCCGAGTGCCTTGCAGGTCTCGTTGACAAAATCCTTGACAGAATACTGGACCCCAGTTGC 268218 |||||| |||| ||||| |||| || ||||| || | ||| | || || || Sbjct 4901 GCCGAGCTTCTTGAAGGTCAAGTTGCAGAACTCCTTAACGCTGTGCTGCTCGCCCGTCGC 4842 Query 268219 AATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTC 268278 | ||| |||| || |||| | ||| ||||| |||||| | | || ||||| Sbjct 4841 CAGCACCCAGTCATCCGGCTTCTCCGCCTGCAGCATCAGCCACATGCCGTACACGTAGTC 4782 Query 268279 CCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTT 268338 | ||| |||||||| |||||| || | || ||| ||||||| || |||||| Sbjct 4781 CTTCGCGTGGCCCCAGTCGCGCAGGGCATTCACGTTGCCGAGGAGGAGATCCTTCTGCAA 4722 Query 268339 GCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACG 268398 ||| ||| | ||| | |||| || || |||||||||||| | ||||| Sbjct 4721 GCCCTTCTTTATGCGCACCGCGGCGCGCACAATCTTCTTTGTCACGAACGTCGCACCACG 4662 Query 268399 TAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACG 268458 | || ||||| || || ||||| ||||||||||| ||||| |||||| |||||| Sbjct 4661 GCGGGGTGATTCGTGATTAAACAGGATACCGTTGCACGCAAACATATCATATGACTCACG 4602 Query 268459 GTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATG 268518 ||||||||| | ||||| | ||| | | ||| || || || || ||| || |||| Sbjct 4601 GTAGTTCACCGTCATCCAGAAGGCATAGAGCTTCGCCACAGCATATGGACTGCGCGGATA 4542 Query 268519 GAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGA 268578 |||||||||| | | || || | || | || ||||| | ||||| || Sbjct 4541 GAAGGGCGTCTTCTCCGACTGCGGCACCTCCTGCACCTTGCCGTACAGCTCACTTGTGCT 4482 Query 268579 TGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACG 268638 ||| |||||||| || || || | ||| | ||||| || ||||| | Sbjct 4481 TGCCTGGTAGAAGCGGCACGTCTTCTCCAAGCCGTTGGCGCGGATCGCGTCGAGGATCTT 4422 Query 268639 AAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGAC 268698 || || |||||| ||||| | | | || ||||| ||| | || || || |||| || Sbjct 4421 CAGCGTCCCCATGGCATCCGTCTGCCCAGTGTACTCGGGCGTGTCAAAAGAGACCTTCAC 4362 Query 268699 ATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTG 268743 || ||| ||| | ||||| || |||||||| || || | ||| Sbjct 4361 GTGCGACTGTGCGGCGAGGTTGTACACCTCATCGGGCTTCAGCTG 4317 >seq78 Length=36107 Score = 123 bits (136), Expect = 5e-23 Identities = 585/904 (65%), Gaps = 48/904 (5%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||||||||| ||| ||| |||||||| | ||| |||| Sbjct 12829 TCATCACGCCTGCCTTCTGGTACTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCCT 12888 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCT-CGGCGCCAA--ACTGCTTGGGGT 10050 || || || | ||||||||| || || ||||||| || | | || ||| | | Sbjct 12889 GCAGCGAGATCATCTCCATGAAATCGAACGGGTTCTTCGACTTGTAGTACCGCTCG---T 12945 Query 10051 AACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCT-CATCAGGTCC 10109 ||||| || || | ||||| || |||||||| ||||| || | |||||||||| Sbjct 12946 TTCCGAGCGCCACGAGCAGCCGGTCCGCAACGAACTCAATGTA-TGTCGACATCAGGTCC 13004 Query 10110 GAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCG 10169 |||||||| ||||||| ||| ||||| || ||||| ||||| || ||| | | Sbjct 13005 GAGTTCATCCCAATCAGGCGCACCGGGATCGCATCGCAGATGAACTCACGCTCGATCTCC 13064 Query 10170 ACCGCTTCCTCGACGATGCTCTTTACCACG-TCAAGGGACAGCTTGTTCTCGA---GCTT 10225 | ||| || || ||| ||||| | ||| ||| | | ||||| | | | | || Sbjct 13065 ATCGCCTCACAGATGAT-CTCTTGAATACGCTCACGCGGAAGCTTCTGGACAATGTGTTT 13123 Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 || || || | |||| | ||| |||||||||||||| |||| || || Sbjct 13124 TTCGTATAGCAGGCATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATT 13183 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 | || ||| || |||||||| || || || |||||||| | ||||||||||| Sbjct 13184 GCTGAACGTCAGCCCTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGA 13243 Query 10346 CCCGGAGAACAGAAGA--CCCTCCAC----GCACACCCAGGCGACGAGGCGCTCTGCGAA 10399 |||||||| ||||| ||||| || ||| || ||||| |||||||| || || Sbjct 13244 GCCGGAGAA--GAAGATGCCCTCAACAGCGGCAAAC----GCGACAAGGCGCTCAGCAAA 13297 Query 10400 GGAGCGGTCGC-GCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCA-GGG 10457 | | || ||| | | || | |||||| || ||||| | || ||| ||| Sbjct 13298 ACACTCGCTGCTGCGGATCC-ACTTAGTTGCCCACTTAGCTTTCTT-CTCAATGCACGGG 13355 Query 10458 ATCGTCTCGATAGCCTCGAAGA-GCTTGTTACGCTCGGTCTC-GTCCTCAATAAGAGCAT 10515 || || ||| || | || | || | | | | | || |||| || || | Sbjct 13356 ATAGTTGAGATGGCGTGAAACAAGC--GGTCCTTTTCGACTGTGTCCGTGATGTAAGTGT 13413 Query 10516 CAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGA 10575 | || || | ||||| ||| ||| ||| |||| || |||| | | |||| Sbjct 13414 CCAGCAGAACAGAGTACATCTCAGAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGA 13473 Query 10576 ACATACGTGCCGAGGGGTCCG-TGACTTC--CTCGGCAAAGTT--GTTGTTC-AGGTTCT 10629 | || || |||| ||||| | ||| | | | | ||| | ||||||| Sbjct 13474 AGCAGCGCACC------TCCGGTGACTGCACCTCCGTCATGAACCGCTGTGCCAGGTTCT 13527 Query 10630 CCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCT 10689 ||| ||| || ||||| || | ||||| || | | | ||||||||||||||| |||| Sbjct 13528 CCAGCACGATCCCATCACTTGCGGCAAAAAATGCCAACACGTGCTTGATGAAGTGCCGCT 13587 Query 10690 CATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCA 10749 | | |||||||| || || ||| || || || | | || | | |||||||| Sbjct 13588 CCCCGTCGTTCAGCTTCTC---CCAATCCGTCATGTCATTGCCCAGGTCAATCTCCTCCA 13644 Query 10750 CGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGG 10809 | ||||||| || | |||| ||||||| ||| | |||||| ||| | ||| | Sbjct 13645 CTGTCCAGATGCTGCTCTCCGCCTCCTTGTACTTCTTCCAGATGTCGTGGTGCTTGATTG 13704 Query 10810 GGAA 10813 |||| Sbjct 13705 GGAA 13708 >seq828 Length=7585 Score = 102 bits (112), Expect = 2e-16 Identities = 181/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 176267 GTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTT 176326 ||||||||| || || || || | ||| || || ||| | | |||| | || Sbjct 5208 GTCCTTGCCGCCCTGCAGCCGTGTACCAAACTGACCGTCCTGCTGGAGCAGCGGCACATT 5149 Query 176327 ATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCC 176386 |||||| |||||| ||||||| || | || || |||| | || ||| |||||| Sbjct 5148 ATTCGAGCCCACGAAGTCTTGTGCGAGGCCAACGATGGTCTGCACCAGCGACTGCTCGCC 5089 Query 176387 GTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTG 176446 |||||| || | |||| |||| ||| ||||| | ||| | || || || | | Sbjct 5088 GTGGTGGTACGCCGCGTGCTCAGAGACGTAACCGGCTAGTTGCACCACCTTAATGGATCG 5029 Query 176447 TACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATC 176506 |||||||||||| |||| || |||| ||||| ||||| ||||||||| ||||| Sbjct 5028 CGTGAGGTTGCGCTTAAACGAGGAAAACATGATCTTGCGCTGTCCGGGCTTCAGCCCATC 4969 Query 176507 GACGACCGACGGAATGGAACGCTC 176530 || || ||| ||||||||||| Sbjct 4968 CACAACGCTCGGGATGGAACGCTC 4945 >seq1853 Length=1862 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 456 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 399 >seq724 Length=8751 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 485 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 428 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 562 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 505 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 704 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 761 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 8408 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 8351 >seq139 Length=28517 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 19859 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 19802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589325276120