Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq78 286 7e-72 seq62 143 5e-29 >seq78 Length=36107 Score = 286 bits (316), Expect = 7e-72 Identities = 588/865 (68%), Gaps = 11/865 (1%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| ||||||| ||||||||| | ||||||| ||||| || | || |||||| | Sbjct 13702 ATCAAGCACCACGACATCTGGAAGAAGTACAAGGAGGCGGAGAGCAGCATCTGGACAGTG 13643 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||||||||||| ||| |||| | | | |||||| ||| || || | Sbjct 13642 GAGGAGATTGACCTGGGCAATGACATGACGGATTGGGAGAAGCTGAACGACGGGGAGCGG 13583 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| || | |||| || || ||||| ||| || || || |||||| Sbjct 13582 CACTTCATCAAGCACGTGTTGGCATTTTTTGCCGCAAGTGATGGGATCGTGCTGGAGAAC 13523 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 ||||| || | ||||||||| |||||||||| |||| |||||||||||| || || Sbjct 13522 CTGGCACAGC-GGTTCATGACGGAGGTGCAGTCACCGGAGGTGCGCTGCTTCTATGGGTT 13464 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||||| ||||| |||||||||||||||||| ||||| | ||||| |||| ||||| Sbjct 13463 CCAGATCGCCATCGAGAACGTGCACTCTGAGATGTACTCTGTTCTGCTGGACACTTACAT 13404 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| | ||||| || | |||| | ||||| || || || ||||| | Sbjct 13403 CACGGACACAGTCGAAAAGGACCGCTTGTTTCACGCCATCTCAACTATCCCGTGCATTGA 13344 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGC-GAGA 42702 |||||| || | ||||| || |||||| || || | ||| || ||| Sbjct 13343 GAAGAAAGCTAAGTGGGCAACTAAGTGGATCCGCAGCAGCG----AGTGTTTTGCTGAGC 13288 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | || || || ||| |||| || ||||||||||||||||| ||| | ||| | | | | Sbjct 13287 GCCTTGTCGCGTTTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCTCGTTCTGCGCGCTGT 13228 Query 42763 TCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 ||||||||||| || || || ||||| || || || ||| || |||||||| Sbjct 13227 TCTGGCTCAAGAAGCGTGGCCTC-ATGCCAGGGCTGACGTTCAGCAATGAACTCATTTCG 13169 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | |||||||| ||||| | |||||||| ||||| || | | | ||| | || Sbjct 13168 CGCGACGAGGGCCTGCACACTGACTTTGCATGCCTGCTATACGAAAAACACATTGTCCAG 13109 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 |||| || ||||| | | | |||||| ||||| ||||||||||| ||| Sbjct 13108 AAGCTTCCGCGTGAGCGTATTCAAGAGATCATCTGTGAGGCGATGGAGATCGAGCGTGAG 13049 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 ||| || | || | || ||| |||| | || |||||| ||||| |||| | Sbjct 13048 TTCATCTGCGATGCGATCCCGGTGCGCCTGATTGGGATGAACTCGGACCTGATGTCGACA 12989 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAA 43060 ||||| ||| ||| || |||| || || ||| | | | || | || |||||| Sbjct 12988 TACATTGAGTTCGTTGCGGACCGGCTGCTCGTGGC-GCTCGGAAACGAGCGGTACTACAA 12930 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 || | ||| ||||| || ||||||| |||||| || |||| ||||| ||||| || Sbjct 12929 GTCGAAGAACCCGTTCGATTTCATGGAGATGATCTCGCTGCAGGGAAAGACGAACTTCTT 12870 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 |||||| |||| || |||||| Sbjct 12869 TGAGAAGAAGGTCGGTGAGTACCAG 12845 >seq62 Length=39022 Score = 143 bits (158), Expect = 5e-29 Identities = 573/881 (65%), Gaps = 41/881 (5%) Strand=Plus/Plus Query 243726 CTTCGGGAGCCACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTAC 243784 ||||||| | ||| |||||| || || || | |||| || || | | ||||||||| Sbjct 14110 CTTCGGGT-CGACGGTGAACTTGATCGCGTCC-ACGGAGGGTCTGCTGCGTAGGTAGTAC 14167 Query 243785 ATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATC 243844 | ||| |||||||| || | ||| |||| || |||||| | |||||||| || Sbjct 14168 ACGCCCGTCTTGAGGCCTTTTTTCCACGCGTAGAAGTGCATCGACGTCAGCTGGC-CA-- 14224 Query 243845 TTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAG 243904 ||| | || ||| || ||||| ||||| ||| ||| |||||||| | | | Sbjct 14225 --GAGGTAGGG------CTCTCA-AGAAACAGGTTCAGGCTCTGACTCTGGTCAATGTAC 14275 Query 243905 GGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTG 243964 | || || | |||||| || || || ||| || || || || ||| Sbjct 14276 TTGCCGCGGTCCACTGCCATGTCAATAAGATCTCGCTGCTTGATTTCCCACACCACTTTG 14335 Query 243965 TAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACG 244024 || | ||| |||| || |||| | | | ||| |||||||||||||| | | | || Sbjct 14336 TACAGCTCCTTCAGGTCGTCCGGGATCGCCTTGATCTTCTGCACCGAGCCGTCATTGGCG 14395 Query 244025 ATGAGCTGGGTGCGCATGTTATCGTTCCACAGG---CCC---AAGCGCTCCAGCGCCTCG 244078 || | |||| ||||||| | |||| |||||||| | | | | | |||| | Sbjct 14396 ATAATCTGGTTGCGCATCTCATCGCTCCACAGGTTTCTCTTTATGAGATCCATC------ 14449 Query 244079 ACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTT- 244137 || || | | | || || || | ||||| || ||||||||| || |||| ||| Sbjct 14450 ACGAGATACTTATTAACAACAGGGAACTCACCGCTCAGCACGCGACGAACATAGATGTTC 14509 Query 244138 GCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGG 244197 | || ||| ||||||| || || | ||||| || ||||||| || ||| || || Sbjct 14510 GATG-TGAATGGCTCGAAGCATTCGTTATTGCCAAGAATCTGCGAGGTTGACGCGGTTGG 14568 Query 244198 CATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTC 244257 ||| || | ||||||||| ||||| || |||| | | | | ||| | ||||| Sbjct 14569 CATTGGTGCTACCAGCAGAGAGTTCCGCATGCCGCTCGTTTCAACGCGCTTCTTCAGCTC 14628 Query 244258 GTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAG 244317 | ||| | |||| |||| || | | |||| |||||| ||||||||||| Sbjct 14629 ATCCCAATTCCACC-GCCCAC----TCTTTG-GTTTTTCATCCCACAGATCAAACTGCAG 14682 Query 244318 CAGCCCCTT-GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCA 244376 || | | || ||||||| || | | || || || | | || | |||| Sbjct 14683 TTTTCCTTCCGATG-CGGGGCTTCCATTGAAGCGCGCATACCGTTCCTCTTCTTCCGCCA 14741 Query 244377 GCTTACA-GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG-TTCAT 244434 | || || ||| | | | ||| ||||||| || ||||||||||| ||||| || | Sbjct 14742 G-TTCCACGCTGGCCACCACCGCGCCGTAGTAAATCGTCTCGAAGAT-ATCTTCATTGAG 14799 Query 244435 GTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCC 244494 || | |||||| ||||| || | || ||| | | ||| | ||| |||| ||| Sbjct 14800 CTCCCTTGCCTTGATATCCGTGAACGGTAGGCGCATGAGCGCGAATAGGTCCGCCAATCC 14859 Query 244495 CTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGG 244554 ||||||||| || || ||||| | || || ||||| | | |||| || || || Sbjct 14860 CTGCACGCCAATCCCAATGGGGCGGTTGAGCATGTTGCTGTCCCTGGCCTCCTTCAACGG 14919 Query 244555 GTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 ||| ||||| ||| || |||||||| ||||| || |||| Sbjct 14920 GTAGTGGTTGCGGTCAATAACCTTGTTCAGGTTCCGCGTGA 14960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305310026960