Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq78 136 5e-27 seq62 127 2e-24 seq155 84.2 3e-11 >seq78 Length=36107 Score = 136 bits (150), Expect = 5e-27 Identities = 345/517 (67%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| |||||| |||||||| ||||| || | || ||| ||||||| Sbjct 12848 GTACTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCCTGCAGCGAGATCATCTCCAT 12907 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAA-ATTGTTGGCACCCCAATCTGTTTGAGGAGAC 125876 ||||| || |||||||| || || | | | | | || | | ||| || | Sbjct 12908 GAAATCGAACGGGTTCTTCGACTTGTAGTACCGCTCGTTTCCGAG-CGCCACGAGCAGCC 12966 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | |||| ||| |||||||||| |||||| || |||||||| || || ||| Sbjct 12967 GGTCCGCAACGAACTCAATGTATGTCGACATCAGGTCCGAGTTCATCCCAATCAGGCGCA 13026 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 |||| ||| || |||||||| | ||| || |||| || || | | ||| | | Sbjct 13027 CCGGGATCGCATCGCAGATGAACTCACGCTCGATCTCCATCGCCTCACAGATGATCTCTT 13086 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTT----GAAGAGTTCCACG---GCA 126049 |||| || | | | || || ||| || || | | || || | ||| Sbjct 13087 GAATACGCTCACGCGGAAG-CTTCTGGACAATGTGTTTTTCGTATAG---CAGGCATGCA 13142 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| || |||||||| || || ||||||||||| ||| ||| |||||| Sbjct 13143 AAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCTGGC 13202 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 ||||| || |||||||| | |||||| | ||| || || || || ||||||||||| ||| Sbjct 13203 ATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATGCCC 13262 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCAC 126229 || ||| || ||||| | || ||||||||||| | | || | || | |||| Sbjct 13263 TCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACA-CTCG--CTGCTGCGGATCCAC 13319 Query 126230 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGA 126266 || | ||||||| || || ||||| || ||||||| Sbjct 13320 TTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGA 13356 >seq62 Length=39022 Score = 127 bits (140), Expect = 2e-24 Identities = 1096/1748 (63%), Gaps = 69/1748 (4%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || |||||||||| ||||||||||| || | ||||| || || | |||||||| | | Sbjct 14156 CGTAGGTAGTACACGCCCGTCTTGAGGCCTTTTTTCCACGCGTAGAAGTGCATCGACGTC 14215 Query 113657 AACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 113715 | || | |||| || || || || | || ||||||| || || || || ||| | Sbjct 14216 AGCTGGCCAGAG-GTAGGGCTCTCAAGAAACAGGTTCAGGCTCTGACTCTGGTCAATGTA 14274 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 || || ||| | ||||| ||||| | ||| | ||||||||||||||| | | Sbjct 14275 CTTGCCGCGGTCCACTGCCATGTCAATAAGATCTCGCTGCTTGATTTCCCACACCACTTT 14334 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| || | ||| | || || ||||| || ||| || || | ||||| | || Sbjct 14335 GTACAGCTCCTTCAGGTCGTCCGGGATCGCCTTGATCTTCTGCACCGAGCCGTCA---TT 14391 Query 113836 GACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 113892 | | || | | || ||| || | ||| || ||||| |||||||| ||| Sbjct 14392 GGCGATAATCTGGTTGCGCATCTCATCGCTCCACAGGTTTCTCTTTATGAGATCCATCAC 14451 Query 113893 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 113952 ||||| |||||| |||||| |||||||| || ||| | | |||||| || | Sbjct 14452 GAGATACTTATTAACAACAGGGAACTCACCGCTCAGCACGCGACGAACATAGATGTTCGA 14511 Query 113953 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCAT 114012 ||| ||||||| ||||| || || || || | || || | ||| || || || ||||| Sbjct 14512 TGTGAATGGCTCGAAGCATTCGTTATTGCCAAGAATCTGCGAGGTTGACGCGGTTGGCAT 14571 Query 114013 GGGTGCCATGAGAAGGCTGTTACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGGGC 114069 ||||| | || || ||| || | || | |||| || ||| | ||| || | Sbjct 14572 TGGTGCTACCAGCAGAGAGTTCCGCATGCCGCTCGTTTC---AACGCGCTTCTTCAGCTC 14628 Query 114070 GTCCCAGTCGTA--GTTGAG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126 ||||| | | | | ||||| | | | ||||| ||||||||| || | || Sbjct 14629 ATCCCAATTCCACCGCCCACTCTTTGGTTTTTCATCCCACAGATCAAACTGCAGTTTTCC 14688 Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186 || || || || ||| | || | | || | |||| | ||||||| ||| Sbjct 14689 TTCCGATGCGGGGCTTCCATTGAAGCGCGCATACCGTTCCTCTTCTTCCGCCAGTTCCAC 14748 Query 114187 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG----CCT 114242 ||| ||| | | || ||| || || ||||| || || | | ||||||| || Sbjct 14749 GCTGGCCACCACCGCGCCGTAGTAAATCGTCTCGAAGAT---ATC-TTCATTGAGCTCCC 14804 Query 114243 TGGCCTCGTCGGAATCA---AACGCGAGTCGGCACAAAATA---AATACATCCGCGAGAC 114296 | |||| | ||| |||| || ||| || | |||| ||||| | | Sbjct 14805 TTGCCTTGAT---ATCCGTGAACG---GTAGGCGCATGAGCGCGAATAGGTCCGCCAATC 14858 Query 114297 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---- 114352 | || || || | ||||| ||||| | ||| || || || || |||| Sbjct 14859 CCTGCACGCCAATCCCAATGGGGCGGTTGAGCATGTTG--CTGTCCCT-GGCCTCCTTCA 14915 Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 ||||| || || | || |||||| | || || || ||||| ||||| || | | Sbjct 14916 ACGGG-TAGTGGTTGCGGTCAATAACCTTGTTCAGGTTCCGCGTGACGACCTTCGTCACT 14974 Query 114413 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 114472 || | || | || ||| || | | | | | || ||| | | || || || Sbjct 14975 TCGTACAGGCGCTGGTGATCGAA--TTCAACTTTGTT-ATTAAGGAAACGCGGCAGAGCA 15031 Query 114473 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 114532 |||||||| || || ||||| | | |||| | | | | ||| || | ||||||||| Sbjct 15032 ATTGACGCAAGGTTGCACACTGCGATCTCTTTCGGAGACGAGTATTCGACAATTTCCGTG 15091 Query 114533 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || | ||||||| ||| || || | ||| || || || ||||| ||||||| || Sbjct 15092 CAAAGGTTTGAACACTTGATCACACCAATGTTATTCTGGTTCGACTTCTTGTTACATGCG 15151 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| | || | | ||| ||||||||| | || | || || || || ||| Sbjct 15152 TCCTTGTACACCAGGAAAGGCACACCCGTCTCCATCTGCGTCTCAAGGATGGCAAACCAC 15211 Query 114653 ACATCG-GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 114711 || || ||| || || || | |||||||| |||||| ||| | Sbjct 15212 ACTTCCTGCGCCTT-CATTGTTTTCACACCGCGCCCCTCACTTTCGTACCGCTCGTACAA 15270 Query 114712 GG-CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 ||| ||| || | || | || | ||| || || | | ||| | | Sbjct 15271 TTTCTTGAAA-TCGTTGCCGTAGCAATCGCTCAACCCAGGCGCTGTGTGTGGATCCATAA 15329 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 | | ||| | || || || ||||||| |||||| ||||| || | ||| || || Sbjct 15330 GCGTCCAGTTTTCATGCTTTTCCACACGCTCCATGAAAAGGTCAGGAACCCACAGCGCGT 15389 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA-AAAG 114889 |||||||||| || || ||||| | ||| ||| | || || |||| Sbjct 15390 AGAAGAGATCACGCGCACGCATATCTTCCTTACCCGTATTCTT-CTTAAGAAGAAGAAAG 15448 Query 114890 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGACCA 114949 | |||||| || | ||||| || || ||||| | ||||| | ||||| || | ||| Sbjct 15449 TTCATGATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCACCCTTGCGCCTACCG 15508 Query 114950 --GCCTGGTTT-ACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCA 115006 |||| | | ||||| | || || ||| | || || |||||||| | | || Sbjct 15509 CCGCCTTGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCCG 15568 Query 115007 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTG---ACATCATGGATG 115063 | ||| || || || ||| |||| | | ||| | | | | || | | Sbjct 15569 TTGGATGTACCGTTCGTTCCCGCAATATAACTCCC---GGCACAGCGGATGTTGTGAACG 15625 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 || || || ||||| || ||| | || |||| ||||||| | | || || ||||| Sbjct 15626 TGGATGCCGATACCACCAGCCGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAG 15685 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCA---GCTCGACATTTGTGGC 115180 || || || || |||| || |||| | ||||||||| |||| || ||||| Sbjct 15686 ATGCCCTCAATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCTC---ATCTGTGGT 15742 Query 115181 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 115240 |||||| ||||||||||| || || ||||| ||||| | || | || | ||||| Sbjct 15743 ACTGGTGTGCCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATA 15802 Query 115241 TTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 115300 | |||||| || ||| ||| | ||||| | |||||||||||||| | || || Sbjct 15803 TAATCGTATGTTTCCTTCACGTGTTGCATGTCAGCACCGTGAATACCGATGGCAACACGA 15862 Query 115301 ATAAACAT 115308 | |||||| Sbjct 15863 AGAAACAT 15870 >seq155 Length=27196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/287 (68%), Gaps = 14/287 (5%) Strand=Plus/Plus Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707 ||| ||||| || || |||| | | ||||||||| |||||| || || || ||||| || Sbjct 4595 GAACTACCGTGAGTCATATGATATGTTTGCGTGCAACGGTATCCTGTTTAATCACGAATC 4654 Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGAT------CACCGATGGTATCAAACA 8761 |||||| ||||| || ||||||||||||||||| | ||| ||| | | | Sbjct 4655 ACCCCGCCGTGGTGCGACGTTCGTGACAAAGAAGATTGTGCGCGCCG-CGGT-GCGCATA 4712 Query 8762 AATCGTCGCGGGTG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACT 8820 || | | | || ||| ||| || | | || ||| | || ||| | | |||| Sbjct 4713 AA--GAAGGGCTTGCAGAAGGATCTCCT---CCTCGGCAACGTGAATGCCCTGCGCGACT 4767 Query 8821 GGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGG 8880 |||| ||||| |||||||| || | | ||||||||| | || || || || ||| Sbjct 4768 GGGGCCACGCGAAGGACTACGTGTACGGCATGTGGCTGATGCTGCAGGCGGAGAAGCCGG 4827 Query 8881 ACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 | || | || | |||||||| ||| ||| ||| | ||||||| Sbjct 4828 ATGACTGGGTGCTGGCGACGGGCGAGCAGCACAGCGTTAAGGAGTTC 4874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597332162472680