Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq62 123 2e-23 >seq62 Length=39022 Score = 123 bits (136), Expect = 2e-23 Identities = 484/745 (65%), Gaps = 16/745 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || ||||| ||||||||||| || || || || ||||||||| || || ||||| Sbjct 15777 GCAACACCGACACTGTTCAACGCTGGCACACCAGTACCACAGATGAGCTCTTGCTTCCTT 15718 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | | || ||| ||| || || | ||||| ||| ||| | || || | Sbjct 15717 GTTGCAATGCGGGATGACAGCATTGAGGGCATCTACGACACCCTAAAGCAGTGCGCCATA 15658 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACG---TGCCAGGGGT 94068 ||| |||| || || || ||||| ||| || ||| || | || |||| || || Sbjct 15657 ATCAGCAAATCGGCTGGTGGTATCGGCATCCACGTTCACAACATCCGCTGTGCCGGGAGT 15598 Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 | || | || || || || || || ||||||||||| || || ||||| || || | Sbjct 15597 TA-TAT-TGCG-GGAACGAACGGTACATCCAACGGCCTTGTGCCAATGCTACGTGTGTGG 15541 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 || || |||| || || ||||| || || || || ||| | |||||| | |||| | Sbjct 15540 AATAATACGGCACGTTATGTGGATCAAGGCGGCGGTAGGCGCAAGGGTGCGATCGCAATT 15481 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGG--CTTTCATCGACCTGCGAAAGAACCACG 94246 || || ||||| ||||| | ||| | || | ||||| || | | | ||||| | Sbjct 15480 TACCTAGAGCCTTGGCATGGCGACAT-CATGAACTTTCTTCTTCTTAAG-AAGAATACGG 15423 Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 | || || | | || | || ||||||||||| || ||||| || |||||||| | Sbjct 15422 GTAAGGAAGATATGCGTGCGCGTGATCTCTTCTACGCGCTGTGGGTTCCTGACCTTTTCA 15363 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 || | || || || || | ||||| ||| | ||| | | || || Sbjct 15362 TGGAGCGTGTGGAAAAGCATGAAAACTGGACGCTTATGGATCCACACACAGCGCCTGGGT 15303 Query 94367 TGTCCGACGTTTGTGGATCGCGTTTTGAAG-ACTTGTATGCTCGTTACGAATCGCAGGGC 94425 || ||| | || || ||| ||| | ||||| | || |||||| |||| Sbjct 15302 TGAGCGATTGCTACGG-CAACGATTTCAAGAAATTGTACGAGCGGTACGAAAGTGAGGGG 15244 Query 94426 AAGGCCAGGAAGGTTATGGATGC-TAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGT 94484 | ||| ||| | || |||||| ||||| | ||| | || ||| | Sbjct 15243 CGCGGTGTGAAAACAATGAAGGCGCAGGAAG-TGTGGTTTGCCATCCTTGAGACGCAGAT 15185 Query 94485 GGAGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGC 94543 |||||||||| ||| | | | ||| ||||||| | ||| ||| ||||| |||||| Sbjct 15184 GGAGACGGGTGTGCCTTTCCTGGTGTACAAGGACGCATGT-AACAAGAAGTCGAACCAGA 15126 Query 94544 AGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTC 94603 | || | || ||||||||| | || || || ||||| || |||||||| || | |||| Sbjct 15125 ATAACATTGGTGTGATCAAGTGTTCAAACCTTTGCACGGAAATTGTCGAATACTCGTCTC 15066 Query 94604 CGGACGAGATTGCTGTGTGTAACCT 94628 || | ||||| || ||||| ||||| Sbjct 15065 CGAAAGAGATCGCAGTGTGCAACCT 15041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494705445621160