Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq78 98.7 1e-15 seq137 84.2 2e-11 >seq78 Length=36107 Score = 98.7 bits (108), Expect = 1e-15 Identities = 337/522 (65%), Gaps = 29/522 (6%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 |||||| || || || ||| ||||||||| ||||||||| ||| | || Sbjct 13354 CCGTGCATTGAGAAGAAAGCTAAGTGGGCAACTAAGTGGATCCGCAGC---AGCGAGTGT 13298 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | || |||||| | || || || ||| || |||||| | || || |||||| || Sbjct 13297 TTTGCTGAGCGCCTTGTCGCGTTTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCTCGTTC 13238 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 ||| | || | | || | | ||| | ||||| || |||||||||||||| || Sbjct 13237 TGCGCGCTGTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGGCTGACGTTCAGCAATGAA 13178 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCG 52567 | || ||||||||||| || |||||||| |||||||| ||||| ||| ||| | | | Sbjct 13177 CTCATTTCGCGCGACGAGGGCCTGCACACTGACTTTGCATGCCTGCTA-TACGAAAAACA 13119 Query 52568 CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG-----------GAG 52616 | | | | || | ||| | | ||||| | |||||| ||| Sbjct 13118 CATTGTCCAGAA----GCTTCCG-------CGTGAGCGTATTCAAGAGATCATCTGTGAG 13070 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 ||| ||| ||||| ||||| | | ||| | ||||| ||| | || ||| Sbjct 13069 GCGATGGAGATCGAGCGTGAGTTCATCTGCGATGCGATCCCGGTGCGCCTGATTGGGATG 13010 Query 52677 AACGCGCAGTCCATGTGCGA-GTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 ||| || | |||| ||| ||||| ||||| || ||||| || ||| | ||| ||| Sbjct 13009 AACTCGGACCTGATGT-CGACATACATTGAGTTCGTTGCGGACCGGCTGCTCGTGGCGCT 12951 Query 52736 CGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 ||| | ||||| ||| | || ||||| || || ||| | | || ||||| Sbjct 12950 CGGAAACGAGCGGTACTACAAGTCGAAGAACCCGTTCGATTTCATGGAGATGATCTCGCT 12891 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| ||||| ||||| || |||||| ||||| ||||| Sbjct 12890 GCAGGGAAAGACGAACTTCTTTGAGAAGAAGGTCGGTGAGTA 12849 >seq137 Length=29121 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || || |||||||| || || || || ||||| || || |||| | Sbjct 22705 GATTCCTTCTGGATATTGTAGTCCGCCAGCGTGCGGCCCTCTTCGAGCTGCTTGCCGGCA 22646 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || || ||||| ||| | || | || | Sbjct 22645 AAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCAC 22587 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | | ||||||||||| || | ||| || || ||||| || || Sbjct 22586 GTTCTCAATGGTGTCACTAGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTT 22527 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 22526 CACAAAGATCTGCAT 22512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496244590383120