Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq137 107 2e-18 >seq137 Length=29121 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | || | ||| || || || || |||||||| || || Sbjct 22738 CCACCACGGAGACGGAGCACAAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGCC 22679 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| | |||||| || || || Sbjct 22678 AGCGTGCGGCCCTCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGCGGG 22619 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||| | | || | |||||| || ||| || Sbjct 22618 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCAATGGTGTCACTAGCCTCCACC 22559 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATTC 127126 |||| | | ||| ||||| ||||| || || ||||| |||||||| || ||| || Sbjct 22558 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATATTTTTTTTGTTG 22499 Query 127127 CTTT 127130 |||| Sbjct 22498 CTTT 22495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475483735465040