Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq78 134 2e-26 seq62 116 5e-21 seq828 87.8 2e-12 >seq78 Length=36107 Score = 134 bits (148), Expect = 2e-26 Identities = 346/518 (67%), Gaps = 18/518 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| |||||| |||||||| ||||| || | || ||| ||||||| Sbjct 12848 GTACTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCCTGCAGCGAGATCATCTCCAT 12907 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAA-ATTGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 ||||| || |||||||| || || | | | | | || | | ||| || | Sbjct 12908 GAAATCGAACGGGTTCTTCGACTTGTAGTACCGCTCGTTTCCGAG-CGCCACGAGCAGCC 12966 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | |||| ||| |||||||||| |||||| || |||||||| || || ||| Sbjct 12967 GGTCCGCAACGAACTCAATGTATGTCGACATCAGGTCCGAGTTCATCCCAATCAGGCGCA 13026 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 |||| ||| || |||||||| | ||| || |||| || || | | ||| | | Sbjct 13027 CCGGGATCGCATCGCAGATGAACTCACGCTCGATCTCCATCGCCTCACAGATGATCTCTT 13086 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT----GAAGAGTTCCA--CA-GCA 127522 ||||| || | | | || || || || || | | || || || ||| Sbjct 13087 GAATACGCTCACGCGGAAG-CTTCTGGACAATGTGTTTTTCGTATAG---CAGGCATGCA 13142 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| || |||||||| || || ||||||||||| ||| ||| |||||| Sbjct 13143 AAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCTGGC 13202 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| | ||| || || ||||| ||||||||||| ||| Sbjct 13203 ATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATGCCC 13262 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCA 127701 || ||| || ||||| | || ||||| ||||| | || || | || ||| Sbjct 13263 TCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGCTGCGGAT----CCA 13318 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGA 127739 ||| | ||||||| || || ||||| || || |||| Sbjct 13319 CTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGA 13356 >seq62 Length=39022 Score = 116 bits (128), Expect = 5e-21 Identities = 1086/1739 (62%), Gaps = 51/1739 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || |||||||||| ||||||||||| || | ||||| || || | ||||| || | | Sbjct 14156 CGTAGGTAGTACACGCCCGTCTTGAGGCCTTTTTTCCACGCGTAGAAGTGCATCGACGTC 14215 Query 115618 AACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | || | |||| || || || || | || ||||||| || || || || ||| | Sbjct 14216 AGCTGGCCAGAG-GTAGGGCTCTCAAGAAACAGGTTCAGGCTCTGACTCTGGTCAATGTA 14274 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 || || ||| | ||||| ||||| | ||| | ||||||||||||||| | | Sbjct 14275 CTTGCCGCGGTCCACTGCCATGTCAATAAGATCTCGCTGCTTGATTTCCCACACCACTTT 14334 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| || | ||| | || || ||||| || ||| || || | ||||| | || Sbjct 14335 GTACAGCTCCTTCAGGTCGTCCGGGATCGCCTTGATCTTCTGCACCGAGCCGTCA---TT 14391 Query 115797 GACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 | | || | | || ||| || | ||| || |||| |||||||| ||| Sbjct 14392 GGCGATAATCTGGTTGCGCATCTCATCGCTCCACAGGTTTCTCTTTATGAGATCCATCAC 14451 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 ||| | |||||| |||||| |||||||| || ||| | | ||||||||| | Sbjct 14452 GAGATACTTATTAACAACAGGGAACTCACCGCTCAGCACGCGACGAACATAGATGTTCGA 14511 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 ||| ||||||| ||||| || || || || | || || | || || || || ||||| Sbjct 14512 TGTGAATGGCTCGAAGCATTCGTTATTGCCAAGAATCTGCGAGGTTGACGCGGTTGGCAT 14571 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 ||||| | || || ||| || | || | || ||| | ||| || | || Sbjct 14572 TGGTGCTACCAGCAGAGAGTTCCGCATGCCGCTCGTTTCAACGCGCTTCTTCAGCTCATC 14631 Query 116034 CCAGTCGTA--GTTGAG-CTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090 ||| | | | | ||||| | | ||||||| ||||||||| || | |||| Sbjct 14632 CCAATTCCACCGCCCACTCTTTGGTTTTTCATCCCACAGATCAAACTGCAGTTTTCCTTC 14691 Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 116150 || || || ||| | || | |||| | |||| | ||||||| ||| ||| Sbjct 14692 CGATGCGGGGCTTCCATTGAAGCGCGCATACCGTTCCTCTTCTTCCGCCAGTTCCACGCT 14751 Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG----CCTTGG 116206 ||| | | || ||| || || ||||| || || | | ||||||| || | | Sbjct 14752 GGCCACCACCGCGCCGTAGTAAATCGTCTCGAAGAT---ATC-TTCATTGAGCTCCCTTG 14807 Query 116207 CCTCGTCGGAATCA---AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGA 116263 ||| | ||| |||| || || | |||| ||||| | || || | Sbjct 14808 CCTTGAT---ATCCGTGAACGGTAGGCGCATGAGCGCGAATAGGTCCGCCAATCCCTGCA 14864 Query 116264 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC----ACGGGA 116319 | || | ||||| ||||| | ||| || || || || |||| ||||| Sbjct 14865 CGCCAATCCCAATGGGGCGGTTGAGCATGTTG--CTGTCCCT-GGCCTCCTTCAACGGG- 14920 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || || | || |||||| | || || || ||||| ||||| || | ||| | Sbjct 14921 TAGTGGTTGCGGTCAATAACCTTGTTCAGGTTCCGCGTGACGACCTTCGTCACTTCGTAC 14980 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 || | || ||| || | | | | | || ||| | | || || || |||||| Sbjct 14981 AGGCGCTGGTGATCGAA--TTCAACTTTGTT-ATTAAGGAAACGCGGCAGAGCAATTGAC 15037 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 || || || ||||| | | |||| | | | | ||| || | ||||||||| || | Sbjct 15038 GCAAGGTTGCACACTGCGATCTCTTTCGGAGACGAGTATTCGACAATTTCCGTGCAAAGG 15097 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 ||||||| ||| || || | ||| || || || ||||| ||||||| || |||||| Sbjct 15098 TTTGAACACTTGATCACACCAATGTTATTCTGGTTCGACTTCTTGTTACATGCGTCCTTG 15157 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG 116619 || | || | ||| ||||||||| | || | || || || || ||| || || Sbjct 15158 TACACCAGGAAAGGCACACCCGTCTCCATCTGCGTCTCAAGGATGGCAAACCACACTTCC 15217 Query 116620 -GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678 ||| || || || | |||||||| |||||| ||| | || Sbjct 15218 TGCGCCTT-CATTGTTTTCACACCGCGCCCCTCACTTTCGTACCGCTCGTACAATTTCTT 15276 Query 116679 AAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 || || | || ||| || | ||| || || | | |||| | || | || Sbjct 15277 GAAATCGTTGCCGT-AGCAATCGCTCAACCCAGGCGCTGTGTGTGGATCCATAAGCGTCC 15335 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | || || || || |||| |||||| ||||| || | ||| ||||| |||||| Sbjct 15336 AGTTTTCATGCTTTTCCACACGCTCCATGAAAAGGTCAGGAACCCACAGCGCGTAGAAGA 15395 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA-AAAGTCCATG 116856 |||| || || ||||| | ||| ||| | || || ||||| |||| Sbjct 15396 GATCACGCGCACGCATATCTTCCTTACCCGTATTCTT-CTTAAGAAGAAGAAAGTTCATG 15454 Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGACCA--GCCT 116914 || || | ||||| || || ||||| | ||||| | |||||||| | ||| |||| Sbjct 15455 ATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCACCCTTGCGCCTACCGCCGCCT 15514 Query 116915 GGTTT-ACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973 | | ||||| | ||||| || | || || |||||||| | | || | ||| Sbjct 15515 TGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCCGTTGGAT 15574 Query 116974 TGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCA 117033 || || || ||| |||| | | | | || | ||| | ||| || || Sbjct 15575 GTACCGTTCGTTCCCGCAATATAACTCCCGGCACAGCGGATGTTGTGAACGTGGATGCCG 15634 Query 117034 ATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 117093 ||||| || ||| | || |||| ||||||| | | || || ||||||| || || Sbjct 15635 ATACCACCAGCCGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGATGCCCTCA 15694 Query 117094 ATCGAGTCACCCTTATTTGCGATGAGGAAGCA---GCTCGACATTTGTGGCCTTGGTGTA 117150 || |||| || |||| | |||||||| |||| || ||||| |||||| Sbjct 15695 ATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCTC---ATCTGTGGTACTGGTGTG 15751 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210 ||||||||||| || || ||||| ||||| | || | || | ||||| | |||||| Sbjct 15752 CCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATATAATCGTAT 15811 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 || ||| || | ||||| | |||||||||||||| | || || | |||||| Sbjct 15812 GTTTCCTTCACGTGTTGCATGTCAGCACCGTGAATACCGATGGCAACACGAAGAAACAT 15870 >seq828 Length=7585 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| ||| |||||||||| ||||||||| |||| |||||| || |||||||| || Sbjct 4509 CTTGAGCAGGTCCGGCCAGAAGTTGTGGATCATGTTGATGATGAGGCCTTTAATGTGGGA 4450 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG 176703 || |||| ||| || | |||||||||||| | || ||||| || Sbjct 4449 GCCGTCGTGGTCCTGGTCGGACATAATCATGAGGTGCCCGTAGCGCAG 4402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613485182760360