Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq78 203 5e-47 >seq78 Length=36107 Score = 203 bits (224), Expect = 5e-47 Identities = 535/806 (66%), Gaps = 18/806 (2%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || |||||||| || ||||| ||||| |||| || || || |||||||| |||| Sbjct 12858 ACCTTCTTCTCAAAGAAGTTCGTCTTTCCCTGCAGCGAGATCATCTCCATGAAATCGAAC 12917 Query 159704 GGGTTCTTC-ACGTGA--TAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCC 159760 ||||||||| || || || |||| || |||||| ||| | |||| || ||| || Sbjct 12918 GGGTTCTTCGACTTGTAGTACCGCT-CGTT--TCCGAGCGCCACGAGCAGCCGGTCCGCA 12974 Query 159761 ACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGC 159820 || || || ||||| | ||||| | || |||| ||||| | ||| | || |||| | Sbjct 12975 ACGAACTCAATGTATGTCGACATCAGGTCCGAGTTCATCCCAATCAGGCGCACCGGGATC 13034 Query 159821 GCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT 159880 || || | | ||||| ||| ||||| | ||| || | |||| | ||| Sbjct 13035 GCATCGCAGATGAACTCACGCTCGATCTCCATCGCCTCACAGATGATCTCTTGAATACGC 13094 Query 159881 TCGTACCCCG--GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 || || | | |||| | |||||| | | | || ||||| |||||||| || Sbjct 13095 TC--ACGCGGAAGCTTCTGGACAATGTGTTTTTCGTATAGCAGGCATGCAAAGTCAGTGT 13152 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 |||| |||||||| || || |||| || ||| | | || || ||||||| |||| Sbjct 13153 GCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCTGGCATGAGGCCAC 13212 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCC 160057 || |||||||| || | || ||| || | ||| || ||||| ||||| || || Sbjct 13213 GCTTCTTGAGCCAGAACAGCGC-GCAGAACGAGCCGGAGAAGAAGATGCCCTCAACAGCG 13271 Query 160058 GCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCC 160117 |||||||| || || | |||| ||||| | || || || || ||||| | | ||| Sbjct 13272 GCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGCTGC---GGATCCACTTAGTTGCC 13328 Query 160118 CATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGC 160177 || | ||| ||||| | |||||||| || || ||||| |||||| | ||||| Sbjct 13329 CACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAAACAAGCGGTCCTTT 13388 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 || ||| |||| ||| | | ||| |||||||| || | |||||| || Sbjct 13389 TCGACTGTGTCCGTGATGTAAGTGTCCAGCAGAACAGAGTACATCTCAGAGTGCACGTTC 13448 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTG 160297 |||||||| ||||| || ||||| | | ||||| | ||||||||||| || Sbjct 13449 TCGATGGCGATCTGGAACCCATAGAAGCAGCGCACCTCCGGTGACTGCACCTCCGTCATG 13508 Query 160298 AACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 |||| || |||| || | || | ||| || || ||||| || ||||||||| Sbjct 13509 AACCGCTGTGCCAGGTTCTCCAGCACGATCCCATCACTTGCGGCAAAAAATGCCAACACG 13568 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417 || |||||| || | ||| | | ||| || ||| ||||| | |||| ||| | | Sbjct 13569 TGCTTGATGAAGTGCCGCTCCCCGTCGTTCAG---CTTCTCCCAATCCGTCATGTCATTG 13625 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCA 160443 ||| |||| ||| ||| | |||| Sbjct 13626 CCCAGGTCAATCTCCTCCACTGTCCA 13651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795126663867760