Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq78 282 4e-71 >seq78 Length=36107 Score = 282 bits (312), Expect = 4e-71 Identities = 627/929 (67%), Gaps = 20/929 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || || || ||||| |||||||| || || || ||||||| Sbjct 12830 CATCACGCCTGCCTTCTGGTACTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCCTG 12889 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGT---GCTTGGTGCC 132707 || || || | | ||| ||||| || ||||| | ||||||| ||| | | || Sbjct 12890 CAGCGAGATCATCTCCATGAAATCGAACGGGTTCTTCGACTTGTAGTACCGCTCGTTTCC 12949 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || | | |||||||||| ||| || |||||||| |||||| |||||| || | Sbjct 12950 GAGCG---CCACGAGCAGCCGGTCCGCAACGAACTCAATGTATGTCGACATCAGGTCCGA 13006 Query 132768 ATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 || | || | ||| |||||||| | ||| ||| || || ||||||| | | Sbjct 13007 GTTCATCCCAATCAGGCGCACCGGGATCGCATCGCAGATGAACTCACGCTCGATCTCCAT 13066 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGC-CGCGCTCGGCCGTTGCACCAAATGCTT-- 132884 ||| || || ||| || || ||| | |||| | | || || | || || Sbjct 13067 CGCCTCACAGATGATCTCTTGAATACGCTCACGCGGAAG-CTTCTGGACAATGTGTTTTT 13125 Query 132885 -GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 | | | || ||| |||||||| |||| ||||||||| | ||||||||||| |||| Sbjct 13126 CGTATAGCAGGCATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGC 13185 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||||||||| || || |||||||| || | ||| ||| || Sbjct 13186 TGAACGTCAGCCCTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGC 13245 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC-GCCGAACGTGGCT 133062 | || ||||||| |||||| || || || || || || |||||||| || ||| Sbjct 13246 CGGAGAAGAAGATGCCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAAC----AC 13301 Query 133063 TCTTTGCTGGCGATCCAGCGCAG-CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 || ||||| |||||| | || ||||| | || || | | | |||||| || || Sbjct 13302 TCGCTGCTGCGGATCCA-CTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGT 13360 Query 133122 TTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAG 133181 | |||||||| ||||| ||| || || | | | | ||| ||||| | || Sbjct 13361 TGAGATGGCGTGAAACAAGCGGTCCTTTTCGACTGTGTCCGTGATGTAAGTGTCCAGCAG 13420 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 || ||||| || ||||| |||||||| |||||||| || || || || ||||| || Sbjct 13421 AACAGAGTACATCTCAGAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGAAGCAGCG 13480 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 | |||| |||||| || ||| |||| |||| || || ||||| || Sbjct 13481 CACCTCCGGTGACTGCACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCC 13540 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 || || ||||| ||||| |||| ||||||||||||||| || ||||| |||||||| Sbjct 13541 ATCACTTGCGGCAAAAAATGCCAACACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAG 13600 Query 133362 GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 |||||| || | |||| ||| |||||| | |||||| || |||| | | | || Sbjct 13601 CTTCTCCCAATCCGTCATGTCATTGCCCAGGTCAATCTCCTCCACTGTCC-AGATGCTGC 13659 Query 133422 -CTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 ||| || | |||||| | |||| ||||| | | || || || | ||| | | Sbjct 13660 TCTCCGCCTCCTTGTACTTCTTCCAGATGTCGTGGTGCTTGATTGGGAAGAGGACATAGC 13719 Query 133481 GGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || |||||| || |||| ||||||||| Sbjct 13720 GGTCGGGGTTCTCCCGCAGGAGCGGCTCC 13748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500154850048640