Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1713 291 1e-73 seq719 192 7e-44 seq1829 145 1e-29 seq120 140 4e-28 seq2 111 2e-19 seq62 105 8e-18 >seq1713 Length=2325 Score = 291 bits (322), Expect = 1e-73 Identities = 614/914 (67%), Gaps = 9/914 (1%) Strand=Plus/Minus Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 ||||| ||||| || || || ||||| |||| | | ||| || | | |||| | | | Sbjct 1895 CACAGCTCCTCGAAGCGCGCGCGGGTGATGGTCGCCTGGAAGTCGATGTTGTCGAAGAGC 1836 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 | || || || || || | || |||| || || | || ||||| |||||||| || Sbjct 1835 GCGTCGATCTCGATCGTCGCCTGCGCCGCAGACGACAGGGTGCGCTTGGCGCGCTCGCAG 1776 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT---CTTATGTTTA 7417 ||||| || | || || || |||||| || | || | || || ||| | || Sbjct 1775 GCCGTGCGGAGGCGGCGCAGCGCACGCTGGCTCGACGACAGGTCCTTGCCCTTGTTCTTG 1716 Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || || ||||| || ||||||| | ||| | ||||| || || || || | | Sbjct 1715 CGCTTGAACTCGTCGCAGAAGTGCGCGACGAGGCGGTTGTCGAAGTCCTCGCCGCCAAGG 1656 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || || || || || |||||||| || || || || | | || || Sbjct 1655 TGCGTGTCGCCGTTCGTGGCCTTCACCTCAAAGATGCCGCCGTCGATCGTCAGCAGCGTC 1596 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT---CGTCTTTG 7594 || || ||||| || || || ||||| || ||||| ||||| || | |||| | Sbjct 1595 ACGTCGAACGTGCCGCCGCCAAGGTCGAAGATGAGCACGTTGCGCTCCTTGCCGTCCTCC 1536 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||| || || ||||||||||| || || || || || || || || || || || Sbjct 1535 ACCTTGTCCAGGCCGTACGCGATGGCGGCGGCTGTCGGCTCGTTGATGATGCGCAGCACC 1476 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | ||| || ||||| || | || || |||||||| || || ||||| ||||| ||||| Sbjct 1475 TCCAGCCCCGCAATCGTGCCGGCGTCCTTCGTCGCCTGCCGCTGCGAGTCGTTGAAGTAC 1416 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || ||||| || ||||| | | | || | ||| || |||||||| ||||| | || Sbjct 1415 GCGGGCACCGTCACCACCGCCTTCTTCACCTGCTTGCCCAGATACGACTCCGCCACCTCC 1356 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 ||||| ||| || |||||||| ||||| || | ||| || || || ||| Sbjct 1355 TTCATCTTGAGCAGCACCATCGAGCTGATCTCCTCCGGGTTGAACGTCTTGGTCTCGCCG 1296 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 | || | || | |||| || || || | | | ||| ||||| | | ||| Sbjct 1295 TGGAACTGCACCTGGATCACAGGCTTCTCATCGCCCTTCGTGATGACCTTGAAGGGCCAG 1236 Query 7895 TCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 | ||||| || | || ||| ||| ||||| | || || || ||||| || Sbjct 1235 TGCTTCATGTCCGCCTGCACCACAGAGTCGCTGAACTTGCGGCCAATGAGGCGCTTCGCG 1176 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGA 8014 || || || ||||| | |||||||| || ||||||||||||||||| || || || Sbjct 1175 TCGAACACGGTGTTGTGCGGGTTCATCGCCACCTGGTTCTTCGCCGCGTCACCAATGAGG 1116 Query 8015 CGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 || || || || || || || ||||| || || ||||| || || |||||||||||| Sbjct 1115 CGCTCCGTA---TCGGTGAAGGCCACGTAGGACGGCGTCGTGCGGTTACCTTGGTCGTTC 1059 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 || || || || ||||| || || ||||| ||||| |||||||| ||||| || |||| Sbjct 1058 GCGATGATCTCCACGCGCTCATTCTGCCACACGCCCACGCACGAGTACGTCGTGCCTAGG 999 Query 8135 TCAATACCGATTGC 8148 ||||| || || || Sbjct 998 TCAATGCCAATAGC 985 >seq719 Length=8888 Score = 192 bits (212), Expect = 7e-44 Identities = 465/696 (67%), Gaps = 11/696 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||| |||||||| || || ||||| ||||| || || ||||| | ||| Sbjct 3296 TCGAAGTCCTCACCGCCCAAGTGCGTGTCGCCCGCCGTCGCCTTCACCTCAAACACACCG 3237 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | || || || || ||||| ||||| || ||||| || ||||| || Sbjct 3236 GACTCAATCGTCAGCAGCGTCACGTCGAACGTGCCACCGCCAAGGTCGAAGATGAGCACC 3177 Query 7577 TTCGTATCGTCGT-CTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | || | | || | || ||||| | ||||||||||| || || || || || Sbjct 3176 ACCTTCTCACCCTTCTCCGCCTTTTTATCCATGCCGTACGCGATGGCGGCGGCTGTCGGC 3117 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || || || || | ||| || ||||| | || || |||||||| || Sbjct 3116 TCGTTGATGATGCGCAGCACCTCCAGCCCCGCAATCACACCGGCGTCCTTCGTCGCCTGC 3057 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || ||||| ||||| ||||| || || ||||| || ||||| | | | || | || || Sbjct 3056 CGCTGCGAGTCGTTGAAGTACGCGGGCACCGTCACCACCGCCTTCTTCACCTGCTCGCCC 2997 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 ||||||| ||||| | || ||||| || || ||||||| ||||| || | Sbjct 2996 AGATACGCCTCCGCCACCTCCTTCATCTTCCCCAGCACCATCGCGCTGATCTCCTCCG-G 2938 Query 7814 GCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | | | || || || || || | | | || || |||| || ||| ||| | | Sbjct 2937 GAAGAAGGTCTTGGTCTCGCCCTGGTACTGCACCTCGATCACCGGCTTA-CCGTCTCGCA 2879 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 || | ||||| | | ||| | || | || || | | |||| |||| Sbjct 2878 CGG--TCACCTTGAAGGGCCAGTGCTTGAGGTCCGACTGCAGGTCGGGGTCGTCGTACTT 2821 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| | ||||| ||||| || | ||||| | |||||||| || ||||| Sbjct 2820 GCGGCCGATCATGCGCTTCGCATCGAAGATGGTGTTCGTTGGGTTCATCGCCACCTGGTT 2761 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 |||||||||||| |||| || || || || || ||||| || ||||| || || Sbjct 2760 CTTCGCCGCGTCGCCGACGAGGCGCTC---GGAGTCAGTGAACGCCACATACGACGGTGT 2704 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 ||| || || || ||||||||||| || || || || ||||||| | |||| || || Sbjct 2703 CGTGCGGTTGCCCTGGTCGTTCGCGATGATCTCCACTTGGTCGTTCTTGAAGACACCCAC 2644 Query 8113 GCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||||| ||||| || || | || || || ||||| Sbjct 2643 GCACGAGTACGTCGTGCCGAGGTCGATGCCAATTGC 2608 >seq1829 Length=1931 Score = 145 bits (160), Expect = 1e-29 Identities = 165/221 (75%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | || || || ||||| || || || || ||||| | |||||||| || Sbjct 1861 AACTTGCGGCCAATGAGGCGCTTCGCGTCGAACACGGTGTTGTGCGGGTTCATCGCCACC 1802 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 ||||||||||||||||| || || || || || ||| | || || || ||||| || Sbjct 1801 TGGTTCTTCGCCGCGTCACCAATGAGGCGCTCCGTAT---CGGTGAAGGCCACGTAGGAC 1745 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || ||||| || || |||||||||||||| || || || ||||| || || ||||| ||| Sbjct 1744 GGCGTCGTGCGGTTACCTTGGTCGTTCGCGATGATCTCCACGCGCTCATTCTGCCACACG 1685 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || |||||||| ||||| || |||| ||||| || || || Sbjct 1684 CCCACGCACGAGTACGTCGTGCCTAGGTCAATGCCAATAGC 1644 >seq120 Length=30378 Score = 140 bits (154), Expect = 4e-28 Identities = 237/341 (70%), Gaps = 8/341 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| ||||| || | ||| || || || || || || ||||||| || Sbjct 25184 TCGAAATCCTCACCGCCAAGGTGCGTGTCACCGTTCGTTGCCACAACCTCAAAGAAGCCC 25243 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | | ||| ||||| || ||||||||||| ||||| || | || | | Sbjct 25244 TCGTCAATTGTCAGAAGCGACACATCGAAGGTACCACCACCGAGGTCGAACACAAGAATG 25303 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| || | |||||| || ||||||||||| || || ||||| || || Sbjct 25304 TTCTTCTCGCCGGCCTTGTTC------AGCCCGTACGCGATGGCGGCGGCCGTCGGCTCG 25357 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| | |||| |||| || ||||| || | || ||||| |||| || || Sbjct 25358 TTGATGATACGCACGACA-TTCAACCCCGCAATCGTACCAGCGTCTTTGGTCGACTGCCG 25416 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| ||||| || || ||||| || || || | | | || |||| ||| || Sbjct 25417 CTGTGCGTCGTTGAAGTACGCGGGCACCGTCACAACGGCATTCTTCACCTTCTCACCAAG 25476 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 || | ||||| || || ||||| || || ||||||| Sbjct 25477 GTAGGTCTCCGCAATCTCCTTCATCTTCTGCAGCACCATCG 25517 >seq2 Length=78253 Score = 111 bits (122), Expect = 2e-19 Identities = 199/285 (70%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || |||||||| | ||| || || || ||||| || || ||||| | || Sbjct 69787 ATCGAAGTCCTCACCACCAAGGTGCGTGTCGCCGTTCGTCGCCTTCACCTCAAACACGCC 69846 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || |||| | | || || | ||| ||||| || ||||| ||||| | | | Sbjct 69847 ACCGGCAATCTCCAGCACAGAGATATCGAACGTGCCGCCACCGAGGTCGTACACCG---C 69903 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || | ||| ||| || ||| || ||||||||||||| ||||| ||||| || || Sbjct 69904 GATCATGCTGTC--CTTCGT-CTTCTCCAGACCGTACGCGAGCGCCGCTGCCGTCGGCTC 69960 Query 7636 ATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || | | || || ||| ||||||||| || || || | || || |||||||| || | Sbjct 69961 GTTCACCACACGGATGAC-GTTCAGGCCCGCGATGGTGCCGGCGTCCTTCGTCGCCTGGC 70019 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCG 7739 | |||| ||||| ||||| || ||| ||| || ||||||| || Sbjct 70020 GCTGCGCGTCGTTGAAGTATGCGGGGCACGTCACCACCGCGTTCG 70064 >seq62 Length=39022 Score = 105 bits (116), Expect = 8e-18 Identities = 274/413 (66%), Gaps = 15/413 (4%) Strand=Plus/Plus Query 105664 ATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAG-ACCCTT-----TACGACGCCCC 105717 || ||| | ||||| || |||| || | ||| || | |||||| ||| |||| | Sbjct 15455 ATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCACCCTTGCGCCTAC--CGCCGC 15512 Query 105718 GCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCG 105777 |||||| ||||| | ||| || || |||| |||| |||||| | || || | | Sbjct 15513 -CTTGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCCGTTG 15571 Query 105778 GATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC---GTACATCGTGAACGTGT 105834 ||||| || || ||||| ||||| | | |||| | | | ||||||||| Sbjct 15572 GATGTACCGTTCGTTCCCGCAATAT---AACTCCCGGCACAGCGGATGTTGTGAACGTGG 15628 Query 105835 AACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATA 105894 | || ||||| |||||| | || ||||| || |||| |||| || ||||| || Sbjct 15629 ATGCCGATACCACCAGCCGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGATG 15688 Query 105895 CCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGT 105954 || || || || || ||| | |||| ||||| || || ||| |||||| ||| Sbjct 15689 CCCTCAATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCTCATCTGTGGTACTGGT 15748 Query 105955 GTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCG 106014 || ||||| |||||||| || |||||||| || | || || || || | ||| Sbjct 15749 GTGCCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATATAATCG 15808 Query 106015 TATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCG 106067 ||||||||| ||||| | || || || |||||||| || || || || Sbjct 15809 TATGTTTCCTTCACGTGTTGCATGTCAGCACCGTGAATACCGATGGCAACACG 15861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635110006671640