Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq78 127 3e-24 seq62 122 1e-22 >seq78 Length=36107 Score = 127 bits (140), Expect = 3e-24 Identities = 173/240 (72%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 ||| | |||||| ||| | || || ||| | |||||||| | ||||| | |||||| Sbjct 13375 TTTCACGCCATCTCAACTATCCCGTGCATTGAGAAGAAAGCTAAGTGGGCAACTAAGTGG 13316 Query 102153 TTTGATACAAAGTCGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGG 102211 || | || ||| | ||||||||||| || |||| ||||| ||||||||| Sbjct 13315 ----ATCCGCAGCAGCGAGTGTTTTGCTGAGCGCCTTGTCGCGTTTGCCGCTGTTGAGGG 13260 Query 102212 TATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 102271 ||||||||||| || || |||||||| | | |||||||||||||| || |||||||| Sbjct 13259 CATCTTCTTCTCCGGCTCGTTCTGCGCGCTGTTCTGGCTCAAGAAGCGTGGCCTCATGCC 13200 Query 102272 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| || ||| ||| || || || || || |||||||| || ||| || ||||| Sbjct 13199 AGGGCTGACGTTCAGCAATGAACTCATTTCGCGCGACGAGGGCCTGCACACTGACTTTGC 13140 >seq62 Length=39022 Score = 122 bits (134), Expect = 1e-22 Identities = 356/546 (65%), Gaps = 17/546 (3%) Strand=Plus/Minus Query 111603 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATT 111662 || ||| ||||||| | ||||| | || || || |||||||| || || | || || Sbjct 15888 ATCGAACGCCCACAGCATATGTTTCTTCGTGTTGCCATCGGTATTCACGGTGCTGACATG 15829 Query 111663 GATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCA 111722 | || ||| |||||||| | ||||| | ||| | || | ||||||||||| Sbjct 15828 CAACACGTGAAGGAAACATACGATTATATGTCTCTTGGCTTCTTTACGCACGCAACACCG 15769 Query 111723 ACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC 111782 || || ||||||||||| |||||| ||| || ||| | ||| |||||| |||||| Sbjct 15768 ACACTGTTCAACGCTGGCACACCAGTACCACAGATGAGCTCTTGCTTCCTTGTTGCAATG 15709 Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAG 111842 ||| || || | ||||| |||| ||| || | | || ||| |||| || Sbjct 15708 CGGGATGACAGCATTGAGGGCATCTACGACACCCTAAAGCAGTGCGCCATAATCAGCAAA 15649 Query 111843 TGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA 111902 | ||||||||||||||| || ||| | || | || | | | | |||| Sbjct 15648 TCGGCTGGTGGTATCGGCATCCACGTTCACAACATCCGCTGTGCCGGGAGTTATATTGCG 15589 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || || || ||| ||| | || || | |||||||| || || | || || || Sbjct 15588 GGAACGAACGGTACATCCAACGGCCTTGTGCCAATGCTACGTGTGTGGAATAATACGGCA 15529 Query 111963 CGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 || ||||| | |||| || || |||||||| | |||||| | || || ||||| Sbjct 15528 CGTTATGTGGATCAAGGCGGCGGTAGGCGCAAGGGTGCGATCGCAATTTACCTAGAGCCT 15469 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA------AGGTGATGAG 112073 ||||| | || |||||| | || ||| | ||| || | ||| | || Sbjct 15468 TGGCATGGCGACATCATGAACTTTCTT------CTTCTTAAGAAGAATACGGGTAAGGAA 15415 Query 112074 GAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 112132 || || |||| || |||||||||| ||| || ||| |||| || || |||||| || | Sbjct 15414 GATATGC-GTGCGCGTGATCTCTTCTACGCGCTGTGGGTTCCTGACCTTTTCATGGAGCG 15356 Query 112133 AGTTGA 112138 || || Sbjct 15355 TGTGGA 15350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620720123107120