Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq78 134 2e-26 seq62 109 6e-19 seq464 84.2 3e-11 >seq78 Length=36107 Score = 134 bits (148), Expect = 2e-26 Identities = 184/257 (72%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || ||||| || || ||||| |||||||| ||| || ||| Sbjct 13140 GCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCT 13199 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | | |||||||| || |||||||||||||| Sbjct 13200 GGCATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATG 13259 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT---TTGTGTCA 117450 ||||| ||| |||||||| | ||||||||| || || | ||| | || Sbjct 13260 CCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAA------ACACTCGCTGCTGCGG 13313 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 117510 | ||| || ||||||| || || ||||||||||| || || | |||| |||||| | | Sbjct 13314 ATCCACTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGA 13373 Query 117511 AATAACTGCTTCTTTTC 117527 || || | | |||||| Sbjct 13374 AACAAGCGGTCCTTTTC 13390 >seq62 Length=39022 Score = 109 bits (120), Expect = 6e-19 Identities = 342/525 (65%), Gaps = 11/525 (2%) Strand=Plus/Plus Query 106784 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 106843 || || |||| |||||||||||| |||| |||||| | | |||||||| | || Sbjct 15350 TCCACACGCTCCATGAAAAGGTCAGGAACCCACAGCGCGTAGAAGAGATCACGCGCACGC 15409 Query 106844 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTC-AAGGAACTCCATGATATCCGCGTGCCA 106902 ||||| | ||| || || ||| ||| || | |||||| || | ||||| Sbjct 15410 ATATCTTCCTTACCCGTATTCT-TCTTAAGAAGAAGAAAGTTCATGATGTCGCCATGCCA 15468 Query 106903 TGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCG 106959 ||||| || || | |||||| | ||||| || || || |||||| ||||| || Sbjct 15469 AGGCTCTAGGTAAATTGCGATCGCACCCTTGCGCCTACCGCCGCCTTGATCCACATAACG 15528 Query 106960 CGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCC 107019 || || || | || || |||||||| | || || | ||| ||| || || || Sbjct 15529 TGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCCGTTGGATGTACCGTTCGTTCC 15588 Query 107020 CCGAATACGAGATTTATTGGCTCTC---ACATCATGGATGTGCATCCCAATACCCCCAGC 107076 | |||| | | ||| | | | || | ||| || || ||||| ||||| Sbjct 15589 CGCAATATAAC---TCCCGGCACAGCGGATGTTGTGAACGTGGATGCCGATACCACCAGC 15645 Query 107077 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 107136 | | || |||| || |||| | | || || | ||||| || | || ||| || Sbjct 15646 CGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGATGCCCTCAATGCTGTCATC 15705 Query 107137 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 | | || | |||||||||| | |||||| ||| |||||| ||||| ||||| || Sbjct 15706 CCGCATTGCAACAAGGAAGCAAGAGCTCATCTGTGGTACTGGTGTGCCAGCGTTGAACAG 15765 Query 107197 GGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGA 107256 || ||||||||||| | || | || | ||||| | |||||||| ||| || Sbjct 15766 TGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATATAATCGTATGTTTCCTTCACGTG 15825 Query 107257 ATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 | ||||| | ||||| || |||||||| ||||| | |||||| Sbjct 15826 TTGCATGTCAGCACCGTGAATACCGATGGCAACACGAAGAAACAT 15870 Score = 105 bits (116), Expect = 8e-18 Identities = 292/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 || || ||||||| || |||||||| |||| |||||||||||| | ||||| || | Sbjct 14156 CGTAGGTAGTACACGCCCGTCTTGAGGCCTTTTTTCCACGCGTAGAAGTGCATCGACGTC 14215 Query 105650 AGCTTGGACA-TCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708 ||| ||| || || || || || | || || |||| || ||||||||||||||| | Sbjct 14216 AGC-TGGCCAGAGGTAGGGCTCTCAAGAAACAGGTTCAGGCTCTGACTCTGGTCAATGTA 14274 Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCG 105768 || || | | ||||| ||||| | ||| | ||||||||||||||| Sbjct 14275 CTTGCCGCGGTCCACTGCCATGTCAATAAGATCTCGCTGCTTGATTTCCCACACCACTTT 14334 Query 105769 GTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTT 105828 ||| || | ||| | || || ||||| | ||| || || | || || | || Sbjct 14335 GTACAGCTCCTTCAGGTCGTCCGGGATCGCCTTGATCTTCTGCACCGA---GCCGTCATT 14391 Query 105829 GACCATGAGATCCTT---CATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGAC 105885 | | || | | || ||| || | | ||| || |||| ||||||| | || Sbjct 14392 GGCGATAATCTGGTTGCGCATCTCATCGCTCCACAGGTTTCTCTTTATGAGATCCATCAC 14451 Query 105886 GAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGT 105945 ||||| ||| || |||| ||||| || || | | | ||||||||||| Sbjct 14452 GAGATACTTATTAACAACAGGGAACTCACCGCTCAGCACGCGACGAACATAGATGTTCGA 14511 Query 105946 CGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 106005 ||| | || || |||||||| ||||| || | || || | ||| || || |||||||| Sbjct 14512 TGTGAATGGCTCGAAGCATTCGTTATTGCCAAGAATCTGCGAGGTTGACGCGGTTGGCAT 14571 Query 106006 TGGTGCCATCAAAAGACTGTTACG 106029 |||||| | || ||| ||| || Sbjct 14572 TGGTGCTACCAGCAGAGAGTTCCG 14595 >seq464 Length=13466 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 168438 AGTTTTGTGAAAATGTACCTCGTCTGAGAAGCAT---CCTTACCACCCATGAGACGCGTA 168494 ||||||||||| ||||| | | | | |||| | |||||| || |||||| | Sbjct 1520 AGTTTTGTGAAGATGTAGCGTG---GGGCCGCATGGTCGTTACCAACCTGCTGACGCGAA 1576 Query 168495 CCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCC 168554 || || ||||| ||| |||| ||||| |||||||| ||||||| ||| | |||| Sbjct 1577 CCGAACTGACCCTCCGGCACAAGCAGGTTGATGTTGTTACCACCCGTGAAGTTCTGTGCC 1636 Query 168555 AACTTAACAATCGTGTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGCG 168614 | |||| ||||| ||| | || || |||||||||||| | || || | |||| | Sbjct 1637 ATTTTAATCATCGTCTCCTGCAGCGAGACCTCACCATGGTGGAAGGCGGAGATCTCCGAG 1696 Query 168615 ACATATGCCGCCAGTTGTGCCACCTT 168640 | || | | |||||| || ||||| Sbjct 1697 ATGTAGCCAGACAGTTGCGCTACCTT 1722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589959627064040