Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq137 125 2e-23 >seq137 Length=29121 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || || |||||||| || || || || | || |||||| Sbjct 22720 ACAAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGCCAGCGTGCGGCCCTCTTCG 22661 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || ||||| || ||||| ||| Sbjct 22660 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGA 22601 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||||||||| | ||||| || || | | |||||| Sbjct 22600 ATCTTCGCCTTCACGTTCTCAATGGTGTCACTAGCCTCCACCTCGAGCGCGATCGTCTTG 22541 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 22540 CCCGTCAGCGTCTTCACAAAGATCTGCAT 22512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109440788066057