Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1674 156 3e-33 >seq1674 Length=2441 Score = 156 bits (172), Expect = 3e-33 Identities = 395/587 (67%), Gaps = 18/587 (3%) Strand=Plus/Minus Query 29806 GGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGT 29865 || |||||||| | ||| ||||| || || || || ||||| || | ||| ||||| Sbjct 2272 GGCTCCACGTGGTTGGAGTACACGTGCGCATCGCCGAGCGTGTGCACCAGCTCGCCCGGC 2213 Query 29866 T-CTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29924 | | |||| | | | ||||| | | ||| || || | ||| |||||||| || Sbjct 2212 CGCAATCCCGCCGCCTTC-GCCATGAGGATCGTCAGCAGCGCGTACGACGCGATGTTGAA 2154 Query 29925 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC 29984 || || ||||| |||||||| | ||| | |||||| ||| || |||||||| |||| Sbjct 2153 CGGCACGCCGAGGCCCATGTCGCACGAGCGCTGGTACAGCATGCAGGAGAGCTCGCCGTT 2094 Query 29985 GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 | || |||| ||||| | | ||||||||| || || ||||| | || | Sbjct 2093 GTTCGCGTAGAACTGCGCGAGGAGGTGGCACGGTGGGAGCGCCATCGCGTGCAGCGCGCA 2034 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 |||||||| ||| | || ||||||| ||| || ||||| | || || | | Sbjct 2033 CGGGTTCCACGCGGTGAGTATCATGCGCCGGTCATCGGGGTT---CGTGCGCAGCGTCTC 1977 Query 30105 GGCGTTTTGCAG---CTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTC-CGTGT 30160 || | ||| | ||| || | || |||| |||||||| | | || || | ||||| Sbjct 1976 TACGATCTGCCGGATCTGGTCGATGCCATTCCCGGAGTAGTC-GTCGTCGTGCCGCGTGT 1918 Query 30161 ACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC 30220 || | || ||||| || | ||||||||| ||||||||||| || ||||| ||| || Sbjct 1917 ACGCCGCGCCGAAGTGTCGCCACTGGAAGCCGTACACCGGGCCAAGGTCCATCTCCTCGT 1858 Query 30221 TGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 || | | ||||| | |||| | ||| | | || |||||| || |||||| | Sbjct 1857 AGT-CGTGCAGCCCGCGGCTGTCGAGGAAGGCGCGCGAGCCGTTGTCGCTCCAGATGTGC 1799 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTT--TGTGGACCCTCTGACGAACCACAGCAGCT 30337 || ||||| ||| ||| || | ||| | ||| | | | || ||||||||||||| Sbjct 1798 ACGCCCTTGTCGCTCAGCAGCTTCGCGTTCGTCTGGCCGCGCAGA--AACCACAGCAGCT 1741 Query 30338 CCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 |||| ||| ||| | ||| ||||| | ||| ||||| || || || Sbjct 1740 CCTCGCAC-ACGCCGCGCCAGAAGACGCGCTTCGTCGTCAGCAGCGG 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408603302342483