Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq12 114 2e-20 >seq12 Length=64810 Score = 114 bits (126), Expect = 2e-20 Identities = 190/267 (71%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 136648 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 136707 |||||||| ||||| | |||||| || | | ||||| ||||| | ||| |||| ||| Sbjct 55167 CCCTTCACACAGAGAAGTTGCTTCAGTGCGCAAACGATCTCCACCAAGTCACTCTGCGCC 55108 Query 136708 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 136767 ||| || | || || | |||||| |||| ||| | || || | ||| |||| ||| Sbjct 55107 CGCATCACGTCATCAATCTTCTTGTATGCCAGCGGCGTCTCATCCAGCACATCAGCATCC 55048 Query 136768 TTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG 136827 |||||||||||||| | |||||||| |||||||| || |||||| | ||| Sbjct 55047 TTGCGGCACTCCACATCGACGGTGGCCGCCTCATGGTCCTCAAGTGTGAAGCGCCGCTTT 54988 Query 136828 GCCTGGGTCCGCGAC-ATCG-TCCGGCCCGCGCCGTGCGAGCACGA-GCAGAAC-GAGTC 136883 |||| |||||| | | | || || || |||||||||||||| ||| | | || Sbjct 54987 GCCT--CTCCGCGGCTGTAGAGCCTTCCAGCCCCGTGCGAGCACGACGCATAGCTCAG-- 54932 Query 136884 CGCATTGCCCTTGCCGCGCACGATGTA 136910 || |||||||| |||||||| || || Sbjct 54931 CGGGTTGCCCTTACCGCGCACAATATA 54905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690119232457200