Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq78 168 1e-36 >seq78 Length=36107 Score = 168 bits (186), Expect = 1e-36 Identities = 536/822 (65%), Gaps = 23/822 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | |||||||||||||| ||||| |||| || |||||| |||| Sbjct 12845 CTGGTACTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCCTGCAGCGAGATCATCTC 12904 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATAC-ACC---CGTGTCAG-GC-CCATCTGTTC 47952 |||||| ||| ||||| | || || ||| ||| || | || ||| | Sbjct 12905 CATGAAATCGAACGGGTTCTTCGACTTGTAGTACCGCTCGTTTCCGAGCGCCA------C 12958 Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| | ||||| ||| |||| |||||| | ||||| ||| |||||| || || Sbjct 12959 GAGCAGCCGGTCCGCAACGAACTCAATGTATGTCGACATCAGGTCCGAGTTCATCCCAAT 13018 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| ||| || | || | || ||||| ||| |||| || || || | | Sbjct 13019 CAGGCGCACCGGGATCGCATCGCAGATGAACTCACGCTCGATCTCCATCGCCTCACAGAT 13078 Query 48073 AATCTGCTTAACGCGGG-ACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 |||| | || || || | || | || | | | ||| || | || |||| || Sbjct 13079 GATCTCTTGAATACGCTCACGCGGAAGCTTC-TGGACAATGTGTTTTTCGTATAGCAGGC 13137 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | |||||||| |||||| ||| ||||| || ||||| | ||| ||| || | Sbjct 13138 ATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCC 13197 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||||| || | || ||||||||||| | || ||| ||||| |||||||||| Sbjct 13198 CTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGA 13257 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 ||||||| || || || |||||| || | ||| | ||| | || | || || Sbjct 13258 TGCCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGCTG---CGGA 13314 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG-- 48369 |||| | ||||| | || ||||||| ||||| || || || ||||| | Sbjct 13315 TCCACTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAA 13374 Query 48370 -GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| || ||| ||||| | || || ||||| | ||||| Sbjct 13375 ACAAGCGGTCCTT---TTCGACTGTGTCCGTGATGTAAGTGTCCAGCAGAACAGAGTACA 13431 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 ||||||||||||| ||||| || |||||||||||||| |||||| | |||| Sbjct 13432 TCTCAGAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGAAGCAGCGCACCTCCGGTG 13491 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||||| || || ||| | || ||| ||||| || |||||||| || | Sbjct 13492 ACTGCACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCCATCACTTGCGG 13551 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 |||| || || | || || || | ||| || ||||| || | | || | ||| Sbjct 13552 CAAAAAATGCCAACACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCTTCTCCCAAT 13611 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 || | ||| ||||||||||| | || ||||| ||||||| Sbjct 13612 CCGTCATGTCATTGCCCAGGTCAATCTCCTCCACTGTCCAGA 13653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931499369616640