Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq78 219 8e-52 >seq78 Length=36107 Score = 219 bits (242), Expect = 8e-52 Identities = 568/860 (66%), Gaps = 15/860 (2%) Strand=Plus/Minus Query 25468 CACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAG 25527 ||| | || || ||| ||| ||||||| |||| | | | | |||||| | || ||| Sbjct 13696 CACCACGACATCTGGAAGAAGTACAAGGAGGCGGAGAGCAGCATCTGGACAGTGGAGGAG 13637 Query 25528 ATTGATCTGGCCAAGGACATGGACGGCT-GGTACGCTCTATCCAAAGACGAGCAGCATTT 25586 ||||| |||| ||| |||||| |||| | || | || | | | |||| ||| || Sbjct 13636 ATTGACCTGGGCAATGACATG-ACGGATTGGGAGAAGCTGAACGACGGGGAGCGGCACTT 13578 Query 25587 TCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTG 25646 ||||| ||||||||||||| ||||| || |||||| || ||| ||||| ||| Sbjct 13577 CATCAAGCACGTGTTGGCATTTTTTGCCGCAAGTGATGGGATCGTGCTGGAGAACCTGGC 13518 Query 25647 CGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || | |||| | ||| ||||||| ||||| || ||||| || |||||||| Sbjct 13517 ACAGCGGTTCATGACGGAGGTGCAGTCACCGGAGGTGCGCTGCTTCTATGGGTTCCAGAT 13458 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGA 25766 |||||||| || |||||||||||| |||| | || ||| || ||||| || || Sbjct 13457 CGCCATCGAGAACGTGCACTCTGAGATGTACTCTGTTCTGCTGGACACTTACATCACGGA 13398 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | | ||| | || || ||||| |||||| || || |||| ||| ||| Sbjct 13397 CACAGTCGAAAAGGACCGCTTGTTTCACGCCATCTCAACTATCCCGTGCATTGAGAAGAA 13338 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 || |||||| | ||||||||| |||| |||| |||| ||||| || || Sbjct 13337 AGCTAAGTGGGCAACTAAGTGGATCCGCAGC---AGCGAGTGTTTTGCTGAGCGCCTTGT 13281 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGC 25945 || ||||| ||||| ||||||||||| ||| ||| ||||| ||| || | ||||||| Sbjct 13280 CGCGTTTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCTCGTTCTGC-GCGCTGTTCTGGC 13222 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || || |||||| |||||| || ||| || ||||| | |||| Sbjct 13221 TCAAGAAGCGTGGCCTCATGCCAGGGCTGACGTTCAGCAATGAACTCATTTCGCGCGACG 13162 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTT 26065 |||| || |||| || ||||| |||||||| ||| ||| | |||| || ||| Sbjct 13161 AGGGCCTGCACACTGACTTTGCATGCCTGCTATACGAAAAACACATTGTCCA-GAAGCTT 13103 Query 26066 CTCAAGAGACCGTCTACA--GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123 | | | || ||| | || |||||| ||||| ||||||||||| ||||| Sbjct 13102 C-CGCGTGAGCGTATTCAAGAGATCATCTGTGAGGCGATGGAGATCGAGCGTGAGTTCAT 13044 Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACA 26182 | || |||||| | || || ||| ||||| Sbjct 13043 CTGCGATGCGATCCCGGTGCGCCTGATTGGGATGAAC-TCGGACCTGATGTCGACATACA 12985 Query 26183 TTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241 |||||| || || |||| ||||| ||| | ||| ||| || | ||||| || Sbjct 12984 TTGAGTTCGTTGCGGACCGGCTGCTCGTGGC-GCTCGGAAACGAGCGGTACTACAAGTCG 12926 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 ||||||||||| || ||||| | || ||| || | || ||||| ||||||||||| Sbjct 12925 AAGAACCCGTTCGATTTCATGGAGATGATCTCGCTGCAGGGAAAGACGAACTTCTTTGAG 12866 Query 26302 AAGAGGGTCGGCGACTATCA 26321 |||| |||||| || || || Sbjct 12865 AAGAAGGTCGGTGAGTACCA 12846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928811466082240