Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq78 134 2e-26 seq62 114 2e-20 seq464 84.2 3e-11 >seq78 Length=36107 Score = 134 bits (148), Expect = 2e-26 Identities = 184/257 (72%), Gaps = 9/257 (4%) Strand=Plus/Minus Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 |||||| | | || ||| | |||||| |||| | || || ||||||||||| || || Sbjct 13390 GAAAAGGACCGCTTGTTTCACGCCATCTCAACTATCCCGTGCATTGAGAAGAAAGCTAAG 13331 Query 65035 TGGGCAATGAAATGGTTTGACACAA---AGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCG 65091 ||||||| || ||| | || | ||| | || || ||||||||| | ||| Sbjct 13330 TGGGCAACTAAGTGGATCCGCAGCAGCGAGTGT------TTTGCTGAGCGCCTTGTCGCG 13277 Query 65092 TTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAG 65151 ||||| ||| ||||| |||||||||||||| || |||||||| | | ||| | ||| Sbjct 13276 TTTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCTCGTTCTGCGCGCTGTTCTGGCTCAAG 13217 Query 65152 AAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGT 65211 ||||| || ||||||||||| || ||| |||||||| ||||| || || ||||| Sbjct 13216 AAGCGTGGCCTCATGCCAGGGCTGACGTTCAGCAATGAACTCATTTCGCGCGACGAGGGC 13157 Query 65212 CTCCACCAGGAGTTTGC 65228 || ||| || ||||| Sbjct 13156 CTGCACACTGACTTTGC 13140 >seq62 Length=39022 Score = 114 bits (126), Expect = 2e-20 Identities = 356/545 (65%), Gaps = 11/545 (2%) Strand=Plus/Minus Query 75201 TCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACA 75260 |||| ||| ||||||| | ||||| | || || || ||||| || ||||| | |||| Sbjct 15890 TCATCGAACGCCCACAGCATATGTTTCTTCGTGTTGCCATCGGTATTCACGGTGCTGACA 15831 Query 75261 TTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACAC 75320 | | || ||| |||||||| | ||||| | || | || | |||||||||| Sbjct 15830 TGCAACACGTGAAGGAAACATACGATTATATGTCTCTTGGCTTCTTTACGCACGCAACAC 15771 Query 75321 CAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCA 75380 | || || ||||| ||||| |||||| ||| |||||| | |||||||||| | || | Sbjct 15770 CGACACTGTTCAACGCTGGCACACCAGTACCACAGATGAGCTCTTGCTTCCTTGTTGCAA 15711 Query 75381 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAA 75440 ||| ||| || | || ||||| | || || | | |||| || |||| | Sbjct 15710 TGCGGGATGACAGCATTGAGGGCATCTACGACACCCTAAAGCAGTGCGCCATAATCAGCA 15651 Query 75441 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGT---GAGAGCCAATAAATCTCGTA 75497 | | |||||| ||||| || || ||| | || | | | ||| | | || Sbjct 15650 AATCGGCTGGTGGTATCGGCATCCACGTTCACAACATCCGCTGTGCCGGGA---GTTATA 15594 Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557 || ||| || || ||| ||| | || || | |||||||| || || | || | Sbjct 15593 TTGCGGGAACGAACGGTACATCCAACGGCCTTGTGCCAATGCTACGTGTGTGGAATAATA 15534 Query 75558 CAGCGCGCTATGTAAATCAA-GCG--GGGCGTCGCAAGGGGTCCATCGCGGTCTACTTGG 75614 | || || ||||| ||||| ||| || | |||||||| | ||||| | ||| | | Sbjct 15533 CGGCACGTTATGTGGATCAAGGCGGCGGTAGGCGCAAGGGTGCGATCGCAATTTACCTAG 15474 Query 75615 AACCATGGCATGCCGATATCATGGAGTTCCTT-GAGTTACGACTCAACCAAGGTGACGAA 75673 | || ||||||| ||| |||||| | || ||| ||| || || ||| | ||| Sbjct 15473 AGCCTTGGCATGGCGACATCATGAACTTTCTTCTTCTTAAGA-AGAATACGGGTAAGGAA 15415 Query 75674 GAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 || || | |||||||| | | |||||| |||| |||||||||||| |||| Sbjct 15414 GATATGCGTGCGCGTGATCTCTTCTACGCGCTGTGGGTTCCTGACCTTTTCATGGAGCGT 15355 Query 75734 GTTGA 75738 || || Sbjct 15354 GTGGA 15350 Score = 91.5 bits (100), Expect = 2e-13 Identities = 289/444 (65%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 76493 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 76552 || ||| ||| || | |||||||||||||| || || ||| | || || | || ||| Sbjct 14595 CGGAACTCTCTGCTGGTAGCACCAATGCCAACCGCGTCAACCTCGCAGATTCTTGGCAAT 14536 Query 76553 AATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAG 76612 || |||||||| || |||| |||| | |||||||| | | | || |||||| Sbjct 14535 AACGAATGCTTCGAGCCATTCACATCGAACATCTATGTTCGTCGCGTGCTGAGCGGTGAG 14476 Query 76613 TTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAG 76672 || |||| || ||| | ||||| | || |||| |||| || ||| | | Sbjct 14475 TTCCCTGTTGTTAATAAGTATCTCGTGATGGATCTCATAAAGAGAAACCTGTGGAGCGAT 14416 Query 76673 GATATG---AAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATC 76729 || ||| || | | || | || | || || | || || ||| | ||| Sbjct 14415 GAGATGCGCAACCAGATTATCGCCAATGACGGC---TCGGTGCAGAAGATCAAGGCGATC 14359 Query 76730 CCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATT 76789 || || || | ||| | || ||| ||||||||||||||| | |||| | ||| Sbjct 14358 CCGGACGACCTGAAGGAGCTGTACAAAGTGGTGTGGGAAATCAAGCAGCGAGATCTTATT 14299 Query 76790 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATG 76849 |||||||| | || || || | |||||| || ||||| || |||| || || | Sbjct 14298 GACATGGCAGTGGACCGCGGCAAGTACATTGACCAGAGTCAGAGCCTGAACCTGTTTCTT 14239 Query 76850 GAAAGTCCAACGA-TGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCT 76908 || || || || || ||| ||| | || ||||| | |||||||||||| | || || Sbjct 14238 GAGAGCCCTACCTCTGGCCA-GCTGACGTCGATGCACTTCTACGCGTGGAAAAAAGGCCT 14180 Query 76909 CAAAACCGGAATGTACTATCTCCG 76932 ||| || || ||||||| || || Sbjct 14179 CAAGACGGGCGTGTACTACCTACG 14156 >seq464 Length=13466 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 14432 AAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTA 14491 ||||| || |||||| | | || || |||| | || || | |||||||||||| || Sbjct 1722 AAGGTAGCGCAACTGTCTGGCTACATCTCGGAGATCTCCGCCTTCCACCATGGTGAGGTC 1663 Query 14492 TCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAAC 14551 || | ||| ||||| |||| ||||| | ||| ||||||| |||||||| ||| Sbjct 1662 TCGCTGCAGGAGACGATGATTAAAATGGCACAGAACTTCACGGGTGGTAACAACATCAAC 1603 Query 14552 CTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGG---ATGCTTCT 14608 || |||| ||| ||||| || ||| |||||| || |||||| | |||| | Sbjct 1602 CTGCTTGTGCCGGAGGGTCAGTTCGGTTCGCGTCAGCAGGTTGGTAACGACCATGCGGCC 1543 Query 14609 CAGACGAGGTACATTTTCACAAAACT 14634 | | | ||||| ||||||||||| Sbjct 1542 C---CACGCTACATCTTCACAAAACT 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596548190608480