Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1713 246 4e-60 seq1829 154 2e-32 seq137 145 1e-29 seq120 141 1e-28 seq719 140 4e-28 >seq1713 Length=2325 Score = 246 bits (272), Expect = 4e-60 Identities = 601/907 (66%), Gaps = 8/907 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || || |||| || || ||||| || || || || ||||| ||||| || Sbjct 985 GCTATTGGCATTGACCTAGGCACGACGTACTCGTGCGTGGGCGTGTGGCAGAATGAGCGC 1044 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| |||||||| ||||| || || || || ||||| ||||| || Sbjct 1045 GTGGAGATCATCGCGAACGACCAAGGTAACCGCACGACGCCGTCCTACGTGGCCTTCACC 1104 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| |||| || || || || || ||| || |||||||| ||| Sbjct 1105 GATACGGAGCGCCTCATTGGTGACGCGGCGAAGAACCAGGTGGCGATGAACCCGCACAAC 1164 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || || ||||||||||| || ||||| |||||||| || || || | Sbjct 1165 ACCGTGTTCGACGCGAAGCGCCTCATTGGCCGCAAGTTCAGCGACTCTGTGGTGCAGGCG 1224 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTG-GCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | | ||| | || || | | | ||| |||||| |||| | Sbjct 1225 GACATGAAGCACTGGCCCT-TCAAGGTCATCACGAAGGGCGATGAGAAGCCTGTGATCCA 1283 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 || | || ||||| |||| || || || || || || || |||||| | Sbjct 1284 GGTGCAGTTCCACGGCGAGACCAAGACGTTCAACCCGGAGGAGATCAGCTCGATGGTGCT 1343 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | | |||||||||||| ||||| || | |||| || ||||| | || || || Sbjct 1344 GCTCAAGATGAAGGAGGTGGCGGAGTCGTATCTGGGCAAGCAGGTGAAGAAGGCGGTGGT 1403 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 ||| || || || ||||||| || || || || |||||||| |||||||| | | || Sbjct 1404 GACGGTGCCCGCGTACTTCAACGACTCGCAGCGGCAGGCGACGAAGGACGCCGGCACGAT 1463 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 |||||| || | || | || ||||| || || ||||| || || || || || || Sbjct 1464 TGCGGGGCTGGAGGTGCTGCGCATCATCAACGAGCCGACAGCCGCCGCCATCGCGTACGG 1523 Query 195838 TCTGGACAAGAACAAGGACG---AAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 ||||||||| |||||| | || || || | ||||| || || || || || Sbjct 1524 CCTGGACAAGGTGGAGGACGGCAAGGAGCGCAACGTGCTCATCTTCGACCTTGGCGGCGG 1583 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| || || | || || | || || || || || || || || ||||| || Sbjct 1584 CACGTTCGACGTGACGCTGCTGACGATCGACGGCGGCATCTTTGAGGTGAAGGCCACGAA 1643 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGA 196014 || || || || || || || || || ||||| || || || || || | || Sbjct 1644 CGGCGACACGCACCTTGGCGGCGAGGACTTCGACAACCGCCTCGTCGCGCACTTCTGCGA 1703 Query 196015 TGAGTTCCGTCGAAAGAATAAG---AAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCG 196071 |||||| || ||||| ||| || || | || | | | || || || || Sbjct 1704 CGAGTTCAAGCGCAAGAACAAGGGCAAGGACCTGTCGTCGAGCCAGCGTGCGCTGCGCCG 1763 Query 196072 GCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGT 196131 || | || || || || || ||||| || || || || ||| |||| || | | | | Sbjct 1764 CCTCCGCACGGCCTGCGAGCGCGCCAAGCGCACCCTGTCGTCTGCGGCGCAGGCGACGAT 1823 Query 196132 TGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTT 196191 ||||| || || | || ||| || |||||| | | || || ||||| || || || Sbjct 1824 CGAGATCGACGCGCTCTTCGACAACATCGACTTCCAGGCGACCATCACCCGCGCGCGCTT 1883 Query 196192 TGAAGAG 196198 || ||| Sbjct 1884 CGAGGAG 1890 >seq1829 Length=1931 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || || |||| || || ||||| || || || || ||||| ||||| || Sbjct 1644 GCTATTGGCATTGACCTAGGCACGACGTACTCGTGCGTGGGCGTGTGGCAGAATGAGCGC 1703 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| |||||||| ||||| || || || || ||||| ||||| || Sbjct 1704 GTGGAGATCATCGCGAACGACCAAGGTAACCGCACGACGCCGTCCTACGTGGCCTTCACC 1763 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| |||| || || || || || ||| || |||||||| ||| Sbjct 1764 GATACGGAGCGCCTCATTGGTGACGCGGCGAAGAACCAGGTGGCGATGAACCCGCACAAC 1823 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516 || || || ||||||||||| || ||||| |||||||| Sbjct 1824 ACCGTGTTCGACGCGAAGCGCCTCATTGGCCGCAAGTT 1861 >seq137 Length=29121 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| ||||||||||| || || || || || || ||| | |||||||| ||| | Sbjct 22511 TATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCTAG 22570 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || ||| | || || |||||||| || ||||| ||||| || || || || Sbjct 22571 TGACACCATTGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 22630 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 ||| | || || ||||| || || ||||| ||||| || || || || || || ||||| Sbjct 22631 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGAGGGCCGCACGCTGGCGGACTACAA 22690 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || ||||| || || || |||||||| || | || || ||||||| Sbjct 22691 TATCCAGAAGGAATCGACGCTGCACCTTGTGCTCCGTCTCCGTGGTGGTG 22740 >seq120 Length=30378 Score = 141 bits (156), Expect = 1e-28 Identities = 236/339 (70%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 195650 ATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGAT 195709 |||||| || ||||||||||||| |||||| | | | | ||| | | ||||| || Sbjct 25515 ATGGTGCTGCAGAAGATGAAGGAGATTGCGGAGACCTACCTTGGTGAGAAGGTGAAGAAT 25456 Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || |||||||| || || || ||||||| || |||| || ||| |||| || |||||| Sbjct 25455 GCCGTTGTGACGGTGCCCGCGTACTTCAACGACGCACAGCGGCAGTCGACCAAAGACGCT 25396 Query 195770 GCTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | | | |||||||| | || |||| | | || ||||| || || || || || || || Sbjct 25395 GGTACGATTGCGGGGTTGAA-TGTCGTGCGTATCATCAACGAGCCGACGGCCGCCGCCAT 25337 Query 195829 TGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGG 195888 || || || || |||||||| || || || || | | | || || ||||| Sbjct 25336 CGCGTACGGGCT------GAACAAGGCCGGCGAGAAGAACATTCTTGTGTTCGACCTCGG 25283 Query 195889 TGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGC 195948 ||||||||| || ||||| || ||||| | ||||| | || | || || || ||| Sbjct 25282 TGGTGGTACCTTCGATGTGTCGCTTCTGACAATTGACGAGGGCTTCTTTGAGGTTGTGGC 25223 Query 195949 TACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| || || || || ||||| |||||||| Sbjct 25222 AACGAACGGTGACACGCACCTTGGCGGTGAGGATTTCGA 25184 >seq719 Length=8888 Score = 140 bits (154), Expect = 4e-28 Identities = 451/693 (65%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || ||||| ||||| | || || || ||||| || || ||||| | | || || | Sbjct 2608 GCAATTGGCATCGACCTCGGCACGACGTACTCGTGCGTGGGTGTCTTCAAGAACGACCAA 2667 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| ||||| || ||||| || || || ||||| || || || || Sbjct 2668 GTGGAGATCATCGCGAACGACCAGGGCAACCGCACGACACCGTCGTATGTGGCGTTCACT 2727 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || ||||| || || || || || || ||| || |||||||| | || Sbjct 2728 GACTCCGAGCGCCTCGTCGGCGACGCGGCGAAGAACCAGGTGGCGATGAACCCAACGAAC 2787 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| || |||||||| | || || ||||||| || | | || Sbjct 2788 ACCATCTTCGATGCGAAGCGCATGATCGGCCGCAAGTACGACGACCCCGACCTGCAGTCG 2847 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || | ||| ||||| | | | ||| || || | | | | | |||||| |||| | Sbjct 2848 GACCTCAAGCACTGGCCCT-TCAAGGTGA-CCGTGCGAGACGG-TAAGCCGGTGATCGAG 2904 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGT-CTATGGTGTT 195657 || | | || || |||| || | || ||||| || | | | | |||||| | Sbjct 2905 GTGCAGTACCAGGGCGAGACCAAG-ACCTTCTTCCCGGAGGAGATCAGCGCGATGGTGCT 2963 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||||||| ||||| | | |||| | ||||| | || || || Sbjct 2964 GGGGAAGATGAAGGAGGTGGCGGAGGCGTATCTGGGCGAGCAGGTGAAGAAGGCGGTGGT 3023 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 ||| || || || ||||||| || || || || |||||||| |||||||| | || || Sbjct 3024 GACGGTGCCCGCGTACTTCAACGACTCGCAGCGGCAGGCGACGAAGGACGCCGGTGTGAT 3083 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 |||||| || | || | || ||||| || || ||||| || || || || || || Sbjct 3084 TGCGGGGCTGGAGGTGCTGCGCATCATCAACGAGCCGACAGCCGCCGCCATCGCGTACGG 3143 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTG---ATCTTTGATCTCGGTGGTGG 195894 |||| || || ||| | | | | || || || ||||| || || || ||||| Sbjct 3144 CATGGATAAAAAGGCGGAGAAGGGTGAGAAGGTGGTGCTCATCTTCGACCTTGGCGGTGG 3203 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| || || | || || | ||||| ||| | || || || ||||| || || Sbjct 3204 CACGTTCGACGTGACGCTGCTGACGATTGAGTCCGGTGTGTTTGAGGTGAAGGCGACGGC 3263 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || | || ||||| || ||||| Sbjct 3264 GGGCGACACGCACTTGGGCGGTGAGGACTTCGA 3296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657838790963120