Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq62 138 3e-27 >seq62 Length=39022 Score = 138 bits (152), Expect = 3e-27 Identities = 323/489 (66%), Gaps = 15/489 (3%) Strand=Plus/Plus Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 ||| || ||||| ||||| || || || ||||| | |||| |||||| || | || || Sbjct 15508 GCCGCCTTGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCC 15567 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG 156181 ||||| || || || ||||| ||||| || | |||| | || |||| || Sbjct 15568 GTTGGATGTACCGTTCGTTCCCGCAATATAACTCCCGGCACAGCGGATGTTGTGAACGTG 15627 Query 156182 TAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAAT 156241 | || |||||||| | | |||| ||| ||||| | ||||| || | | | || Sbjct 15628 GATGCCGATACCACCAGCCGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGAT 15687 Query 156242 ACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGG 156301 || ||||| ||||| ||||| | || |||| || || | || ||| ||| Sbjct 15688 GCCCTCAATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCTCATCTGTGGTACTGG 15747 Query 156302 TGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATC 156361 ||| ||||||||||| ||||| |||||||| || |||| | | |||||||||||| Sbjct 15748 TGTGCCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATATAATC 15807 Query 156362 GTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCA 156421 |||||| ||||| | | | | | || |||||||||| ||| | || | | | Sbjct 15808 GTATGTTTCCTTCACGTGTTGCATGTCAGCACCGTGAATACCGATGGCAACACGAAGAAA 15867 Query 156422 CATATGCTGAGGACGCTCTACAATC---------ACTCCATCAATT------CGCAGAAG 156466 ||||||||| || || || | ||| || || || || ||||| | Sbjct 15868 CATATGCTGTGGGCGTTCGATGATCTTCATTTCACCTTCAGCAGTTTTCACGCGCAGTAA 15927 Query 156467 GTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATC 156526 ||||| ||||||||| ||| | |||||| ||||||| | || | |||||||| Sbjct 15928 GTATGAGCGTTCCAGTGTTCGGTAGCCGAAAAAATCAAAGTTCATGTCCCTCTTGTAATC 15987 Query 156527 AATCATTTC 156535 ||||| || Sbjct 15988 GATCATGTC 15996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471763459649527