Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq78 174 2e-37 seq62 91.5 2e-12 >seq78 Length=36107 Score = 174 bits (192), Expect = 2e-37 Identities = 219/301 (73%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | ||||||||||||||||||||| || || ||| | |||||| | || Sbjct 13437 GAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGAAGCAGCGCACCTCCGGTGACTGC 13496 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| |||||||||| ||||||||||| |||||| || || || ||||| ||| Sbjct 13497 ACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCCATCACTTGCGGCAAAA 13556 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || |||| ||||||||||| ||||| ||||| ||||| | ||| | |||| | Sbjct 13557 AATGCCAACACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCTTCTCCCAATCCGTC 13616 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| || ||||| | |||||| | |||||||| | ||| |||| |||||| Sbjct 13617 ATGTCATTGCCCAGGTCAATCTCCTCCACTGTCCAGATGCTGCTCTCCGCCTCCTTGTAC 13676 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGC 869932 ||| ||| | | |||| ||| |||||||||||| |||||| |||||| || ||| Sbjct 13677 TTCTTCCAGATGTCGTGGTGCTTGATTGGGAAGAGGACATAGCGGTCGGGGTTCTCCCGC 13736 Query 869933 A 869933 | Sbjct 13737 A 13737 Score = 134 bits (148), Expect = 2e-25 Identities = 193/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| || | ||| ||||| || | || || ||||||||||| |||||| Sbjct 13158 CCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCTGGCATGAGGCCACGCTTC 13217 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| || | |||||||| ||| ||||| ||||||||||| || |||||||| Sbjct 13218 TTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATGCCCTCAACAGCGGCAAAC 13277 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| || ||||| ||||| ||| || || ||||||||| | ||||| Sbjct 13278 GCGACAAGGCGCTCAGCAAAACACTCGCTGC------TGCGGATCCACTTAGTTGCCCAC 13331 Query 869360 TCGGCCTTTTTCCTCACCG-ACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 | | |||| | |||| | |||| | || ||||||| |||| | | |||||||||| Sbjct 13332 TTAG-CTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAAACAAGCGGTCCTTTTC 13390 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 | | | |||| ||| || ||||| | ||| Sbjct 13391 GACTGTGTCCGTGATGTAAGTGTCCAGCAG 13420 >seq62 Length=39022 Score = 91.5 bits (100), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1626983 GGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGG 1627042 |||||||||| |||| ||| ||||| ||| ||| ||| |||| || ||||||| ||| | Sbjct 14115 GGTCGACGGTGAACTTGATCGCGTCCACGGAGGGTCTGCTGCGTAGGTAGTACACGCCCG 14174 Query 1627043 TCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGT 1627082 |||||||||| |||||||||| |||||||||||| Sbjct 14175 TCTTGAGGCCTTTTTTCCACGCGTAGAAGTGCATCGACGT 14214 Score = 91.5 bits (100), Expect = 2e-12 Identities = 178/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || || || || ||||| | || | || || ||||| ||||| ||||||||||| Sbjct 15515 TGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCCGTTGGAT 15574 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||| || ||||| | || ||||| ||| | ||||| || | |||| Sbjct 15575 GTACCGTTCGTTCCCGCAATATAACTCCCGGCACAGCGGATGTTGTGAACGTGGATGCCG 15634 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || ||||| ||| ||| | |||||||| || || ||||||||||||||||| Sbjct 15635 ATACCACCAGCCGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGATGCCCTCA 15694 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| || ||| | || || ||||| || | || || | ||||| Sbjct 15695 ATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCTCATCTGTGGTACTGGTGTGCCA 15754 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGC 1630328 |||||||| || || || || || Sbjct 15755 GCGTTGAACAGTGTCGGTGTTGC 15777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106903592295107