Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq78 185 1e-40 seq1570 87.8 3e-11 >seq78 Length=36107 Score = 185 bits (204), Expect = 1e-40 Identities = 240/328 (73%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| || | ||| ||||| || || || ||||||||||| |||||| Sbjct 13158 CCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCTGGCATGAGGCCACGCTTC 13217 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| || | || ||||| ||| ||||| ||||||||||| || |||||||| Sbjct 13218 TTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATGCCCTCAACAGCGGCAAAC 13277 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || ||||| |||||| || | || || ||||||||| | |||||| Sbjct 13278 GCGACAAGGCGCTCAGCAAAA-----CACTCGCT-GCTGCGGATCCACTTAGTTGCCCAC 13331 Query 794521 TCTGCCTTTTTCCTCACCG-AGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | | |||| | |||| | | || | || ||||||| |||| | | ||||||| || Sbjct 13332 T-TAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAAACAAGCGGTCCTTTTC 13390 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| | |||| ||| ||| ||||| | || | ||||| |||| ||||| | ||| || Sbjct 13391 GACTGTGTCCGTGATGTAAGTGTCCAGCAGAACAGAGTACATCTCAGAGTGCACGTTCTC 13450 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||||||||||||| ||||| |||||| Sbjct 13451 GATGGCGATCTGGAACCCATAGAAGCAG 13478 Score = 131 bits (144), Expect = 3e-24 Identities = 188/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210 |||| ||| || |||||| ||||||| || ||||||||||| |||||| || | Sbjct 13483 CCTCCGGTGACTGCACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCCAT 13542 Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCG 796270 | || ||||| ||||| || | ||||||||||| ||||| ||||| ||||| | ||| Sbjct 13543 CACTTGCGGCAAAAAATGCCAACACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCT 13602 Query 796271 AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCT 796330 |||| | | |||| ||| ||||| | |||||| | ||||| | | | || Sbjct 13603 TCTCCCAATCCGTCATGTCATTGCCCAGGTCAATCTCCTCCACTGTCCAGATGCTGCTCT 13662 Query 796331 CGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGAT 796390 | |||| |||||| ||| ||| || |||| ||| ||||| || ||| |||| | Sbjct 13663 CCGCCTCCTTGTACTTCTTCCAGATGTCGTGGTGCTTGATTGGGAAGAGGACATAGCGGT 13722 Query 796391 TGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||||||||| || || |||||||| Sbjct 13723 CGGGGTTCTCCCGCAGGAGCGGCTC 13747 >seq1570 Length=2798 Score = 87.8 bits (96), Expect = 3e-11 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGT-GCTCGACGACATCGTGGGCAACGAGCACGC 2018974 || ||| | || |||||||||||| |||| | | | |||||||| ||||||| | |||| Sbjct 643 CCTTGGGTGGAGAAGTACCGCCCG-CAGTCGATGGCGGACATCGTCGGCAACGCGGACGC 701 Query 2018975 CGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGG 2019034 ||||| || ||| | | || || |||||| |||| |||||| | || || Sbjct 702 TGTTGCGCGGCTGCAGGTGATTGCGAAGGAGGGCAACCTGCCGAACCTCCTCCTCTGCGG 761 Query 2019035 CCCGCCCGGCACGGGCAAGACCACGAGCAT 2019064 |||||| |||||||||||||| || ||||| Sbjct 762 CCCGCCGGGCACGGGCAAGACGACAAGCAT 791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915940998635369