Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq12 114 4e-21 >seq12 Length=64810 Score = 114 bits (126), Expect = 4e-21 Identities = 223/325 (69%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 37194 GGCCCGCGAGGGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAA--GTCATTCATC 37251 ||| |||| || || |||| | || |||||| |||||||| || || || || Sbjct 54853 GGCACGCGCAGGTGAACTGGCAGTTATTCCTGGCAGCATGGGTGCAAAAAGTTAT--ATT 54910 Query 37252 GTTCGCGGCAAGGGAAATTCCGAATCGTTCTGC-TCTTGCAGCCACGGTGCCGGTCGAAT 37310 || ||||| ||||| || ||| | | ||| || ||| ||||| || || | | Sbjct 54911 GTGCGCGGTAAGGGCAAC-CCGCTGAGCTATGCGTCGTGCTCGCACGGGGCTGGAAGGCT 54969 Query 37311 GATGAGCCGGGCCGAAGCAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCACCAA 37370 ||||| | || ||||| || || |||||| | ||||| ||||||||||||||| Sbjct 54970 CTACAGCCGCGGAGAGGCAAAGCGGCGCTTCACACTTGAGGACCATGAGGCGGCCACCGT 55029 Query 37371 AGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGA 37430 | | | ||||||||||| ||||| || ||| | || |||||||| ||| |||||| | Sbjct 55030 CGATGTGGAGTGCCGCAAGGATGCTGATGTGCTGGATGAGACGCCGCTGGCATACAAGAA 55089 Query 37431 CATCGATGCGGTCATGGCCGCGCAATCCGCCCTGGTGGACATCGTGCACACGCTGCGCCA 37490 || |||| || ||| ||||| | | ||||||| ||||| | | ||| || Sbjct 55090 GATTGATGACGTGATGCGGGCGCAGAGTGACTTGGTGGAGATCGTTTGCGCACTGAAGCA 55149 Query 37491 AGTCGTTTGCGTGAAGGGTTGAGGA 37515 | | | || |||||||| |||||| Sbjct 55150 ACTTCTCTGTGTGAAGGGATGAGGA 55174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139278451400452