Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq62 241 1e-58 seq78 176 4e-39 seq137 114 1e-20 seq2141 89.7 5e-13 >seq62 Length=39022 Score = 241 bits (266), Expect = 1e-58 Identities = 1130/1758 (64%), Gaps = 61/1758 (3%) Strand=Plus/Plus Query 147952 TGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACG 148011 |||| || ||||||| ||||||||||||||| | ||| |||||| ||||| ||||| Sbjct 14154 TGCGTAGGTAGTACACGCCCGTCTTGAGGCCTTTTTTCCACGCGTAGAAGTGCATCGACG 14213 Query 148012 ACA--TGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAAT 148069 || || || | | || ||| | | |||||| || | ||| ||||||||||| Sbjct 14214 TCAGCTG-GCCAG-AGGTAGGGCTCTCAAGAAACAGGTTCAGGCTCTGACTCTGGTCAAT 14271 Query 148070 GAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAGGC 148126 | || ||| ||||| | ||||| ||||| || ||||| ||| || ||||| | Sbjct 14272 GTACTTGCCGCGGTCCACTGCCATGTCAATAAGATCTCGCTG---CTTGATTTCCCACAC 14328 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 | ||||||||| ||| | | || || || | | ||| ||||||||||||| Sbjct 14329 CACTTTGTACAGCTCCTTCAGGTCGTCCGGGATCGCCTTGATCTTCTGCACCGAGCCGTC 14388 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGT-CAT 148245 | || | |||||| |||||||| || || | | ||||| || || || | ||| Sbjct 14389 ATTGGCGATAATCTGGTTGCGCATCTCATCGCTCCACAGGTTTCTCTTTATGAGATCCAT 14448 Query 148246 CGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGT 148305 | | ||||||| ||| || || | ||||| ||| |||||||| || | ||| | || Sbjct 14449 C-ACGAGATACTTATTAACAACAGGGAACTCACCGCTCAGCACGCGACGAACATAGATGT 14507 Query 148306 TGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGG 148365 | || || || || || | ||||| ||||| | |||||||| ||| | || || | Sbjct 14508 TCGATGTGAATGGCTCGAAGCATTCGTTATTGCCAAGAATCTGCGAGGTTGACGCGGTTG 14567 Query 148366 GCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG---CTTCA 148422 |||| ||||||||||| ||||| |||| |||| ||| | ||| ||||| Sbjct 14568 GCATTGGTGCTACCAGCAGAGAGTTCCGCATGCCGCTCGTTTCAA---CGCGCTTCTTCA 14624 Query 148423 GAGCCGCCCAGTCCCAGAGCGGCGAC-----GGTGTCACGTTCCACATGTCGTACTGCAG 148477 | | |||| | || | || | || ||| | | | ||||| || ||||||| Sbjct 14625 GCTCATCCCAATTCC--ACCGCCCACTCTTTGGTTTTTCATCCCACAGATCAAACTGCAG 14682 Query 148478 AATGCC-GCGGCTAGCGGGGCTGCCCTCGTA-CGAGCTGTACGGTCCGTGCGCCGCCGCC 148535 | || | | | |||||||| || | | | || || ||| || | | | ||||| Sbjct 14683 TTTTCCTTCCGAT-GCGGGGCTTCCATTGAAGCGCGC-ATACCGTTCCTCTTCTTCCGCC 14740 Query 148536 AGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC 148595 ||||| ||| ||| | | |||||||||||||||||||||| || | ||| Sbjct 14741 AGTTCCACGCTGGCCACCACCGCGCCGTAGTAAATCGTCTCGAAGATATCTTCATTG--- 14797 Query 148596 AGCGCCGCCGACTCGCTTTC---GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGG 148652 ||| || | || | | || | |||| | |||| || | || ||| || | Sbjct 14798 AGCTCCCTTGCCTTGATATCCGTGAACGGTAGGCGCATGAGCGCGAATAGGTCCGCCAAT 14857 Query 148653 CCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC 148712 ||||| ||||| | |||||||| |||| |||||| | | || || | | Sbjct 14858 CCCTGCACGCCAATCCCAATGGGGCGGTTGAGCATGTTGCTGTCCCTGGCCTCCTTCAAC 14917 Query 148713 GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTC- 148770 || |||||||||||||| || | ||||| || || ||| || ||||| || | ||| Sbjct 14918 GGGTAGTGGTTGCGGTCAATAACCTTGTTCAGGTTCCGCGTGACGACCTTCGTCACTTCG 14977 Query 148771 ----TGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATA 148826 |||| | || || || |||| || || | | | || || || || Sbjct 14978 TACAGGCGCTGGTGATCGAATTCAACTTTGTTAT-TA--AGGAAACGCGGCAGAGCAATT 15034 Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 || || || |||||||| || |||| | ||| | ||| || || || || | ||| Sbjct 15035 GACGCAAGGTTGCACACTGCGATCTCTTTCGGAGACGAGTATTCGACAATTTCCGTGCAA 15094 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 || || || |||||||| || | ||| || || || ||| |||| || |||||| Sbjct 15095 AGGTTTGAACACTTGATCACACCAATGTTATTCTGGTTCGACTTCTTGTTACATGCGTCC 15154 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCA 149004 ||||||| || | | || | || || |||| |||||| || | ||| || | | || Sbjct 15155 TTGTACACCAGGAAAGGCACACCCGTCTCCATCTGCGTCTCAAGGATGGCAAACCA--CA 15212 Query 149005 GGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 |||||||| || | | | | ||| ||||| ||||| |||| Sbjct 15213 CTTCCTGCGCCTTCATTGTTTTCACACCGCGCCCCTCACTTTCGTACCGCTCGTACAATT 15272 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACT-TGTGCGGGCACATGAGC 149123 || ||| | | ||||||||||||| | ||| ||| || |||| || ||| ||| Sbjct 15273 TCTTGAAATCGTTGCCGTAGCAATCG-CTCAACCCAGGCGCTGTGTGTGGATCCATAAGC 15331 Query 149124 GACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTAC 149183 | ||| | | | | ||| |||| ||| || || || || ||||| |||||||| Sbjct 15332 GTCCAGTTTTCATGCTTTTCCACACGCTCCATGAAAAGGTCAGGAACCCACAGCGCGTAG 15391 Query 149184 ATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGTTG-AGCACGC 149241 | ||| || |||| | ||| ||||| ||| | || | | | | | || | | Sbjct 15392 AAGAGATCACGCG-CACGCATATCTTCCTTACCCGTATT-CTTCTTAAGAAGAAGAAAGT 15449 Query 149242 TGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GC 149298 | | ||||| | ||||| ||||| | ||| | |||| ||| ||||||||| | || Sbjct 15450 TCATGATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCACCCTTGCGCCTACCGC 15509 Query 149299 CGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCAC 149358 |||| || || || | || || | || || |||| || | ||| || ||| ||| Sbjct 15510 CGCCTTGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCCGT 15569 Query 149359 TGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGC-TCGCACTTTGTGCACGTTG 149417 ||| || ||||| || ||| ||| ||| || | || | ||||| |||| | Sbjct 15570 TGGATGTACCGTTCGTTCCCGCAATATAACTCCCG-GCACAGCGGATGTTGTGAACGTGG 15628 Query 149418 ACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGAT 149476 | |||||| || || |||| | || ||| ||||| | || || |||||| Sbjct 15629 ATGCCGATACCACCAGCCG-ATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGAT 15687 Query 149477 GCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACG 149536 |||||| |||||||| | ||| | | || ||||| |||| ||| || || | | Sbjct 15688 GCCCTCAATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCTCATCTGTGGTACTGG 15747 Query 149537 CGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTC 149596 ||||| || ||||| || || | ||||| ||||| | | ||| || Sbjct 15748 TGTGCCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATATAATC 15807 Query 149597 GTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAG 149656 ||| | || |||| | | ||||||| | || || || || ||||| || || | | Sbjct 15808 GTATGTTTCCTTCACGTGTTGCATGTCAGCACCGTGAATACCGATGGCAACACGAAGAAA 15867 Query 149657 CATATGCTGCGGTCGCTC 149674 ||||||||| || || || Sbjct 15868 CATATGCTGTGGGCGTTC 15885 >seq78 Length=36107 Score = 176 bits (194), Expect = 4e-39 Identities = 340/497 (68%), Gaps = 15/497 (3%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||| ||||| |||||||| ||||| || || |||| || ||| || | | Sbjct 12845 CTGGTACTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCCTGCAGCGAGATCATCTC 12904 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGG---CCCAACTGTACGAG 120467 ||| || ||||||||||| ||| || |||| | ||| | || | | ||||| Sbjct 12905 CATGAAATCGAACGGGTTCTTCGACTTGTAGTA---CCGCTCGTTTCCGAGCGCCACGAG 12961 Query 120468 CAGTCGGTCCGCTACAAACTCAATGTAC-TCGCACATGGACTGCGCGTTCATGCCCAGCA 120526 ||| |||||||| || ||||||||||| ||| |||| | || |||||| || | || Sbjct 12962 CAGCCGGTCCGCAACGAACTCAATGTATGTCG-ACATCAGGTCCGAGTTCATCCCAATCA 13020 Query 120527 ACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACA 120586 |||||| | ||| || ||||| ||| || |||| |||||| || | Sbjct 13021 GGCGCACCGGGATCGCATCGCAGATGAACTCACGCTCGATCTCCATCGCCTCACAGATGA 13080 Query 120587 TGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 | | | ||| | | || | ||| || | ||| | || ||| |||||| | Sbjct 13081 TCTCTTGAATACGCTCACGCGGAAGCTTCTGGACAATGTGTTTTTCGTATAGCAGGCATG 13140 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| ||||||||||||||||||||||| || || || ||||| |||||||| || | Sbjct 13141 CAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCTG 13200 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| ||| | |||||| |||| | ||| || ||| || ||||| | || Sbjct 13201 GCATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATGC 13260 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAA--CGTCGCCGTCTTGCTGTCGAT 120824 |||| || |||||| ||||| | |||||| || || |||| ||||| ||| Sbjct 13261 CCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGC-----TGCTGCGGAT 13315 Query 120825 CCACTTCATGGCCCACT 120841 |||||| | ||||||| Sbjct 13316 CCACTTAGTTGCCCACT 13332 >seq137 Length=29121 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| |||||||| || ||| |||| || |||||||||||||| Sbjct 22708 GTCGATTCCTTCTGGATATTGTAGTCCGCCAGCGTGCGGCCCTCTTCGAGCTGCTTGCCG 22649 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| |||||||| ||||| ||| Sbjct 22648 GCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 22589 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | | |||||| |||| | || || ||||| ||||| || Sbjct 22588 ACGTTCTCAATGGTGTCACTAGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTC 22529 Query 133644 TTTACGAAAATCTGCATGGCTTATTTATTCCTT 133676 || || || |||||||| || ||| || ||| Sbjct 22528 TTCACAAAGATCTGCATATTTTTTTTGTTGCTT 22496 >seq2141 Length=1243 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 19957 GCGCACGTAGCCCTCCTCGCCGTAGTCGGCGCCCCACGAGTTTTTGATCGTCCAGTACGG 20016 ||| | ||||||||||||||| || | |||||||||||| ||||| |||||||||| Sbjct 530 GCGGATGTAGCCCTCCTCGCCCCAGGATGTGCCCCACGAGTTCTTGATGATCCAGTACGG 589 Query 20017 CACGTTGTTCTCGACGCCGTAGCCCACGAGCAGCACCGCGTGGT 20060 | | |||| | || |||||||||| || |||||| |||||| Sbjct 590 CGGGCTGTTGCTGTCGTCGTAGCCCACAAGAAGCACCCCGTGGT 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403451236040