Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq137 82.4 5e-11 >seq137 Length=29121 Score = 82.4 bits (90), Expect = 5e-11 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | || || || || || || || ||||| || | Sbjct 22740 CACCACCACGGAGACGGAGCACAAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCG 22681 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || ||||| | || || | || || |||||||| |||| | |||||| || ||| Sbjct 22680 CCAGCGTGCGGCCCTCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGCG 22621 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | || || ||||| ||| ||| |||| | | ||| |||||| || | ||| Sbjct 22620 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGTTCTCAATGGTGTCACTAGCCTCC 22562 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTG 33759 || || | || |||||| || || || | ||| || ||||||||||||||| || | || Sbjct 22561 ACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATATTTTTTTTG 22502 Query 33760 TT 33761 || Sbjct 22501 TT 22500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692498544320