Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq62 100 3e-16 >seq62 Length=39022 Score = 100 bits (110), Expect = 3e-16 Identities = 366/563 (65%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTT-CGGCGTCGCTGTACTGCACGATTTC 147518 || || ||||| || ||||| || || |||||| ||| | || ||| | || ||||| Sbjct 15029 GCAATTGACGCAAGGTTGCACACTGCGATCTCTTTCGGAGACGA-GTATTCGACAATTTC 15087 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | ||| ||||| || || || || || | || | ||| || ||| || || Sbjct 15088 CGTGCAAAGGTTTGAACACTTGATCACACCAATGTTATTCTGGTTCGACTTCTTGTTACA 15147 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 ||||| ||| | | || | | || | || ||||| | ||||| |||| ||| ||| Sbjct 15148 TGCGTCCTTGTACACCAGGAAAGGCACACCCGTCTCCATCTGCGTCTCAAGGATGGCAAA 15207 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTC 147695 || || |||||||| || | | | ||| ||||| ||||||||||||| Sbjct 15208 CCA---CACTTCCTGCGCCTTCATTGTTTTCACACCGCGCCCCTCACTTTCGTACCGCTC 15264 Query 147696 GTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTG-ATGCGGAC 147754 |||||| || || |||| ||||||||||||| | || || | ||| || ||| Sbjct 15265 GTACAATTTCTTGAAATCGTTGCCGTAGCAATCGCTCAACCCAGG-CGCTGTGTGTGGAT 15323 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 ||| |||| ||| | || | | | || || ||| || || || || ||||||| Sbjct 15324 CCATAAGCGTCCAGTTTTCATGCTTTTCCACACGCTCCATGAAAAGGTCAGGAACCCACA 15383 Query 147815 GCGCGTACATAAGATCGCGCGCTTTGCA-ATCCTCGGCGCCCATGTTGCGTTTCAAATTA 147873 ||||||| | ||||| ||||| ||| ||| || ||| | || || | | | Sbjct 15384 GCGCGTAGAAGAGATCACGCGC-ACGCATATCTTCCTTACCCGTATTCTTCTTAAGAAGA 15442 Query 147874 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC 147933 || | | | ||||||| | ||||| || || | ||| | || | |||||| || ||| Sbjct 15443 AGAAAGTTCATGATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCACCCTTGCGC 15502 Query 147934 TT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCC 147990 | ||||| || || |||| || || | || || |||| || | ||| || | Sbjct 15503 CTACCGCCGCCTTGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACA 15562 Query 147991 AGGCCGCTCGCAGTGCCGTTGGT 148013 |||||| | | || ||||| || Sbjct 15563 AGGCCGTTGGATGTACCGTTCGT 15585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594095615560