Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1674 212 7e-50 >seq1674 Length=2441 Score = 212 bits (234), Expect = 7e-50 Identities = 404/588 (69%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 146922 GGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGG 146981 |||||||||||||||| ||| |||||||| || || || |||||||| | || ||||| Sbjct 2273 GGGCTCCACGTGGTTGGAGTACACGTGCGCATCGCCGAGCGTGTGCACCAGCTCGCCCGG 2214 Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 | | || | | | | |||| | | || ||||||| ||| || |||||||| Sbjct 2213 CCGCAATCCCGCCGCCTTCGCCATGAGGATCGTCAGCAGCGCGTACGACGCGATGTTGAA 2154 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| | ||| | |||||||||| ||| |||||||| |||| Sbjct 2153 CGGCACGCCGAGGCCCATGTCGCACGAGCGCTGGTACAGCATGCAGGAGAGCTCGCCGTT 2094 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 | | |||| ||||| |||| ||||||||| || |||||||| ||| |||| ||| Sbjct 2093 GTTCGCGTAGAACTGCGCGAGGAGGTGGCACGGTGGGAGCGCCATCGCGTGCAG---CGC 2037 Query 147162 G---GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTC---CTCTTAATCTC 147215 | |||||||| || | || | || |||| | ||||||||| | | |||| Sbjct 2036 GCACGGGTTCCACGCGGTGAGTATCATGCGCCGGTCATCGGGGTTCGTGCGCAGCGTCTC 1977 Query 147216 TTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGT--TTGTCCCGCAGTCC 147273 | |||| | || | |||||| | ||| | || ||||| | ||| || | | Sbjct 1976 TACGAT---CTGCCGGATCTGGTCGATGCCATTCCCGGAGTAGTCGTCGTCGTGCCG--C 1922 Query 147274 ACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGC 147333 |||| || || ||||| | |||||||||||||||||| || || ||||| | | Sbjct 1921 GTGTACGCCGCGCCGAAGTGTCGCCACTGGAAGCCGTACACCGGGCCAAGGTC-CATCTC 1863 Query 147334 TTTCTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 | | || | ||||||| | | ||| || || | || |||| | || |||||| Sbjct 1862 CTCGTAGTCGTGCAGCCCGCGGCTGTCGAGGAAGGCGCGCGAGCCGTTGTCGCTCCAGAT 1803 Query 147393 GCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAG 147452 | ||| |||||| || ||| ||| | || ||| ||| || | ||||| ||||| Sbjct 1802 GTGCACGCCCTTGTCGCTCAGCAGCTTCGCGTTCGTCTGGCCGCGCAGAAACCACAGCAG 1743 Query 147453 CTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500 |||||| | || || | ||| ||||| | ||| || |||||||| || Sbjct 1742 CTCCTCGCACACGCCGCGCCAGAAGACGCGCTTCGTCGTCAGCAGCGG 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583467060074400