Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq78 297 3e-74 >seq78 Length=36107 Score = 297 bits (328), Expect = 3e-74 Identities = 429/596 (72%), Gaps = 11/596 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||| ||||| || ||||| |||||| |||||| ||||| ||| |||| Sbjct 13747 GAGCCGCTCCTGCGGGAGAACCCCGACCGCTATGTCCTCTTCCCAATCAAGCACCACGAC 13688 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | | |||| || |||| ||| | | | ||||| | |||||| | ||||| Sbjct 13687 ATCTGGAAGAAGTAC-AAGGAGGCGGAGAGCAGCATCTGGACAGTGGAGGAGATTGACCT 13629 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| |||| | | |||| | ||||| ||||| ||||| || ||||||||||| Sbjct 13628 GGGCAATGACATGACGGATTGGGAGAAGCTGAACGACGGGGAGCGGCACTTCATCAAGCA 13569 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| | || |||||| ||||| || ||||| |||||| ||||||||||| || | Sbjct 13568 CGTGTTGGCATTTTTT-GCCGCAAGTGATGGGATCGTGCTGGAGAACCTGGCACAGCGGT 13510 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| ||||| || | || |||| || | || || ||||||||||||||||||| Sbjct 13509 TCATGACGGAGGTGCAGTCACCGGAGGTGCGCTGCTTCTATGGGTTCCAGATCGCCATCG 13450 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||| | |||||||| | ||||| | ||| | ||||| ||| ||| |||| | |||| Sbjct 13449 AGAACGTGCACTCTGAGATGTACTCTGTTCTGCTGGACACTTACATCACGGACACAGTCG 13390 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGT-CGGTGAGGAAAAAGGCCGAC 1456134 | ||||||| | | |||| ||||||| || | |||| | ||| ||| || || | Sbjct 13389 AAAAGGACCGCTTGTTTCACGCCATCTCAACTATCCCGTGCATTGA-GAAGAAAGCTAAG 13331 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194 ||||| | ||||||||| | || || | | ||||| ||||| || |||| | Sbjct 13330 TGGGCAACTAAGTGGATCCGC-AGCAGCGAGT----GTTTTGCTGAGCGCCTTGTCGCGT 13276 Query 1456195 TTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 ||||||| || ||||||||||| ||||| ||| |||||||| | || |||||||||| Sbjct 13275 TTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCTCGTTCTGCGCGCTGTTCTGGCTCAAGA 13216 Query 1456254 AGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||| ||||||||||| || || | || ||||| ||| | || |||||||| Sbjct 13215 AGCGTGGCCTCATGCCAGGGCTGACG-TTCAGCAATGAACTCATTTCGCGCGACGA 13161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177534286773102