Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq78 98.7 1e-15 >seq78 Length=36107 Score = 98.7 bits (108), Expect = 1e-15 Identities = 234/346 (68%), Gaps = 16/346 (5%) Strand=Plus/Plus Query 21533 CCACGCACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGC 21592 ||||| || || ||||| ||||| ||||||||| |||| ||| | ||||| | Sbjct 12955 CCACGAGCAGCCGGTCCGCAACGAACTCAATGTATGTCGACATCAGGTCCGAGTTCATCC 13014 Query 21593 CCAACAGATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCT 21652 | | ||| ||||| | ||| ||| || ||||| |||||| ||| ||| || Sbjct 13015 CAATCAGGCGCACCGGGATCGCATCGCAGATGAACTCACGCTCGATCTCCATCGCCTCAC 13074 Query 21653 TGATCATGGCGTGTATT---TCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGT 21709 ||| || | || || |||| ||||| || || || | |||| ||| | Sbjct 13075 AGATGATCTCTTGAATACGCTCAC--GCGGAAGCTT---CTGGA----CAATGTGTTTTT 13125 Query 21710 TGTAGTAG-AGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTG 21768 ||| ||| || || ||||| | ||||||| ||||||||||||||||| | ||| ||| Sbjct 13126 CGTA-TAGCAGGCATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTG 13184 Query 21769 CTGAACGTGAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTA 21828 |||||||| || || ||||| | || || || || | | || | | |||| | | | Sbjct 13185 CTGAACGTCAGCCCTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGCG-CGCAGAACGA 13243 Query 21829 -CCGGaaaaaaaCACGCCCTCCACAATGGCGAACGCCACCATGCGC 21873 ||||| || || | |||||| ||| ||| ||||| || | |||| Sbjct 13244 GCCGGAGAAGAAGATGCCCTCAACAGCGGCAAACGCGACAAGGCGC 13289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505380262514920