Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq78 107 2e-18 >seq78 Length=36107 Score = 107 bits (118), Expect = 2e-18 Identities = 256/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| |||||||| || || || ||||| || || || ||| ||||| Sbjct 13567 GTGTTGGCATTTTTTGCCGCAAGTGATGGGATCGTGCTGGAGAACCTGGCACAGCGGTTC 13508 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | || || || | ||| || | || || || |||||||| || || ||||| || Sbjct 13507 ATGACGGAGGTGCAGTCACCGGAGGTGCGCTGCTTCTATGGGTTCCAGATCGCCATCGAG 13448 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 || | || || || |||||| | ||||| | || || ||||||| || ||| Sbjct 13447 AACGTGCACTCTGAGATGTACTCTGTTCTGCTGGACACTTACATCACGGACACAGTCGAA 13388 Query 44030 AAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTG 44088 ||| | || |||||| | || || ||| | || ||| ||| | | ||||| | || Sbjct 13387 AAGGACCGCTTGTTTCACGCCATCTCAACTATCCCGTGC-ATTGAGAAGAAAGCTAAGTG 13329 Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 ||| ||| ||||| | || | ||||| || || |||||||||||||| | Sbjct 13328 GGCAACTAAGTGGATCCGCAGCAGCGAGTGTTTTGCTGAGCGCCTTGTCGCGTTTGCCGC 13269 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAG 44207 ||| || ||||| ||||| || || ||||| ||| || | || ||| | ||||| || | Sbjct 13268 TGTTGAGGGCATCTTCTTCTCCGGCTCGTTCTGC-GCGCTGTTCTGGCTCAAGAAGCGTG 13210 Query 44208 GTTTGATGCCTGGGTTGACGTT 44229 | | ||||| ||| ||||||| Sbjct 13209 GCCTCATGCCAGGGCTGACGTT 13188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442092890355