Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq78 131 2e-25 seq62 109 7e-19 >seq78 Length=36107 Score = 131 bits (144), Expect = 2e-25 Identities = 183/255 (72%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || ||||| || || ||||| |||||||| ||| || ||| Sbjct 13140 GCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCT 13199 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | | |||||||| || |||||||||||||| Sbjct 13200 GGCATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATG 13259 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA-GCGAGACTTTGCATCAAA 122837 ||||| ||| |||||||| | |||||| || || || | || || | || Sbjct 13260 CCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGCTGCGGAT---- 13315 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || ||||||| || || ||||||||||| || || | |||| |||||| | ||| Sbjct 13316 CCACTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAAA 13375 Query 122898 TAACTGCTTCTTTTC 122912 || | | |||||| Sbjct 13376 CAAGCGGTCCTTTTC 13390 >seq62 Length=39022 Score = 109 bits (120), Expect = 7e-19 Identities = 354/545 (65%), Gaps = 11/545 (2%) Strand=Plus/Plus Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 111616 || || |||| |||||||||||| |||| |||||| | | |||||||| | || Sbjct 15350 TCCACACGCTCCATGAAAAGGTCAGGAACCCACAGCGCGTAGAAGAGATCACGCGCACGC 15409 Query 111617 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTC-AAGGAACTCCATGATATCCGCGTGCCA 111675 ||||| | ||| || || ||| ||| || | |||||| || | ||||| Sbjct 15410 ATATCTTCCTTACCCGTATTCT-TCTTAAGAAGAAGAAAGTTCATGATGTCGCCATGCCA 15468 Query 111676 TGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCG 111732 ||||| || || | |||||| | ||||| || || || |||||| ||||| || Sbjct 15469 AGGCTCTAGGTAAATTGCGATCGCACCCTTGCGCCTACCGCCGCCTTGATCCACATAACG 15528 Query 111733 CGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCC 111792 || || || | || || |||||||| | || || | ||| ||| || || || Sbjct 15529 TGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCCGTTGGATGTACCGTTCGTTCC 15588 Query 111793 CCGAATACGAGATTTATTGGCTCTC---ACATCATGGATGTGCATCCCAATACCCCCAGC 111849 | |||| | | ||| | | | || | ||| || || ||||| ||||| Sbjct 15589 CGCAATATAAC---TCCCGGCACAGCGGATGTTGTGAACGTGGATGCCGATACCACCAGC 15645 Query 111850 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 111909 | | || |||| || |||| | | || || | ||||| || | || ||| || Sbjct 15646 CGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGATGCCCTCAATGCTGTCATC 15705 Query 111910 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 | | || | |||||||||| | |||||| ||| |||||| ||||| ||||| || Sbjct 15706 CCGCATTGCAACAAGGAAGCAAGAGCTCATCTGTGGTACTGGTGTGCCAGCGTTGAACAG 15765 Query 111970 GGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGA 112029 || ||||||||||| | || | || | ||||| | |||||||| ||| || Sbjct 15766 TGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATATAATCGTATGTTTCCTTCACGTG 15825 Query 112030 ATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTC 112089 | ||||| | ||||| || ||||| || || || | ||||| | ||||||| ||| Sbjct 15826 TTGCATGTCAGCACCGTGAATACCGATGGCAACACGAAGAAACATATGCTGTGGGCGTTC 15885 Query 112090 CATGA 112094 |||| Sbjct 15886 GATGA 15890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628009461501600