Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq78 154 2e-32 seq62 109 7e-19 >seq78 Length=36107 Score = 154 bits (170), Expect = 2e-32 Identities = 350/518 (68%), Gaps = 20/518 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||| |||||||| ||||| || | || ||| ||||||| Sbjct 12849 TACTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCCTGCAGCGAGATCATCTCCATG 12908 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 ||||| || |||||||| || || | | ||| | ||| | | ||| || || Sbjct 12909 AAATCGAACGGGTTCTTCGACTTGTAGTACCGCTCGTT-TCCGAGCGCCACGAGCAGCCG 12967 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 |||| ||| |||||||||| |||||| || |||||||| || || ||| Sbjct 12968 GTCCGCAACGAACTCAATGTATGTCGACATCAGGTCCGAGTTCATCCCAATCAGGCGCAC 13027 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 |||| ||| || |||||||| | ||| || |||| || || | | ||| | || Sbjct 13028 CGGGATCGCATCGCAGATGAACTCACGCTCGATCTCCATCGCCTCACAGATGATCTCTTG 13087 Query 129967 AATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTCTT----GAAGAGTTCCACG---GCA 130018 ||| ||| || | || || || ||| || || | | || || | ||| Sbjct 13088 AATACGCTCACGCGGAAG--CTTCTGGACAATGTGTTTTTCGTATAG---CAGGCATGCA 13142 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| || |||||||| || || ||||||||||| ||| ||| |||||| Sbjct 13143 AAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGCCCTGGC 13202 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 ||||| || |||||||| | |||||| | ||| || || ||||| ||||||||||| ||| Sbjct 13203 ATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAGATGCCC 13262 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCA 130197 || ||| || ||||| | || ||||||||||| | || || | || ||| Sbjct 13263 TCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGCTGCGGAT----CCA 13318 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGA 130235 ||| | ||||||| || || ||||| || ||||||| Sbjct 13319 CTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGA 13356 >seq62 Length=39022 Score = 109 bits (120), Expect = 7e-19 Identities = 1085/1743 (62%), Gaps = 59/1743 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || |||||||||| ||||||||||| || | ||||| || || | ||||| || | | Sbjct 14156 CGTAGGTAGTACACGCCCGTCTTGAGGCCTTTTTTCCACGCGTAGAAGTGCATCGACGTC 14215 Query 117897 AACTTGG-AGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 | || | ||||| | || || || | || ||||||| || || || || ||| | Sbjct 14216 AGCTGGCCAGAGG-TAGGGCTCTCAAGAAACAGGTTCAGGCTCTGACTCTGGTCAATGTA 14274 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 || || ||| | ||||| ||||| | ||| | ||||||||||||||| | Sbjct 14275 CTTGCCGCGGTCCACTGCCATGTCAATAAGATCTCGCTGCTTGATTTCCCACACCACTTT 14334 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| || | ||| | || || ||||| || ||| || || | || || | || Sbjct 14335 GTACAGCTCCTTCAGGTCGTCCGGGATCGCCTTGATCTTCTGCACCGAGCCGTCA---TT 14391 Query 118076 GACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 | | || | | || ||| || | ||| || ||||| |||||||| ||| Sbjct 14392 GGCGATAATCTGGTTGCGCATCTCATCGCTCCACAGGTTTCTCTTTATGAGATCCATCAC 14451 Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 ||||| |||||| |||||| |||||||| || ||| | | |||||| || | Sbjct 14452 GAGATACTTATTAACAACAGGGAACTCACCGCTCAGCACGCGACGAACATAGATGTTCGA 14511 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 ||| ||||||| ||||| || || || || | || || | || || || || ||||| Sbjct 14512 TGTGAATGGCTCGAAGCATTCGTTATTGCCAAGAATCTGCGAGGTTGACGCGGTTGGCAT 14571 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGAGC 118309 ||||| | || || ||| || | || | |||| || ||| | ||| || | Sbjct 14572 TGGTGCTACCAGCAGAGAGTTCCGCATGCCGCTCGTTTC---AACGCGCTTCTTCAGCTC 14628 Query 118310 GTCCCAGTCGTA--GTTGAG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 118366 ||||| | | | | ||||| | | | ||||| ||||||||| || | || Sbjct 14629 ATCCCAATTCCACCGCCCACTCTTTGGTTTTTCATCCCACAGATCAAACTGCAGTTTTCC 14688 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 118426 || || || || ||| | || | |||| | |||| | ||||||| ||| Sbjct 14689 TTCCGATGCGGGGCTTCCATTGAAGCGCGCATACCGTTCCTCTTCTTCCGCCAGTTCCAC 14748 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG----CCT 118482 ||| ||| | | || ||| || || || || || || | | ||||||| || Sbjct 14749 GCTGGCCACCACCGCGCCGTAGTAAATCGTCTCGAAGAT---ATC-TTCATTGAGCTCCC 14804 Query 118483 TGGCCTCGTCGGAATCA---AACGCGAGTCGGCACAAAATA---AATACATCCGCGAGAC 118536 | |||| | ||| |||| || ||| || | |||| ||||| | | Sbjct 14805 TTGCCTTGAT---ATCCGTGAACG---GTAGGCGCATGAGCGCGAATAGGTCCGCCAATC 14858 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGG 118596 | || || || | ||||| ||||| | ||| || | || || || || | Sbjct 14859 CCTGCACGCCAATCCCAATGGGGCGGTTGAGCATGTTGCTGTCCCTGGCCTCCTTCAACG 14918 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 | || || | || |||||| | || || || ||||| ||||| || | ||| | Sbjct 14919 GGTAGTGGTTGCGGTCAATAACCTTGTTCAGGTTCCGCGTGACGACCTTCGTCACTTCGT 14978 Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 || | || ||| || | | | | | || ||| | | || || || |||| Sbjct 14979 ACAGGCGCTGGTGATCGAA--TTCAACTTTGTT-ATTAAGGAAACGCGGCAGAGCAATTG 15035 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 |||| || || ||||| | | |||| | | | | ||| || | |||||||||||| | Sbjct 15036 ACGCAAGGTTGCACACTGCGATCTCTTTCGGAGACGAGTATTCGACAATTTCCGTGCAAA 15095 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 |||||||| ||| || || | ||| || || || ||||| ||||||| || |||| Sbjct 15096 GGTTTGAACACTTGATCACACCAATGTTATTCTGGTTCGACTTCTTGTTACATGCGTCCT 15155 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| | || | | ||| ||||||||| | || | || || || || ||| || | Sbjct 15156 TGTACACCAGGAAAGGCACACCCGTCTCCATCTGCGTCTCAAGGATGGCAAACCACACTT 15215 Query 118897 CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA-GAGGGCT 118955 | || || || | |||||||| |||||| ||| | || Sbjct 15216 CCTGCGCCTTCATTGTTTTCACACCGCGCCCCTCACTTTCGTACCGCTCGTACAATTTCT 15275 Query 118956 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 119015 | ||| || | || | || | ||| || || | | ||| | || | | Sbjct 15276 TGAAA-TCGTTGCCGTAGCAATCGCTCAACCCAGGCGCTGTGTGTGGATCCATAAGCGTC 15334 Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075 || | || || || || |||| |||||| ||||| || | ||| ||||| ||||| Sbjct 15335 CAGTTTTCATGCTTTTCCACACGCTCCATGAAAAGGTCAGGAACCCACAGCGCGTAGAAG 15394 Query 119076 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA-AAAGTCCAT 119134 ||||| || || ||||| | ||| ||| | || || ||||| ||| Sbjct 15395 AGATCACGCGCACGCATATCTTCCTTACCCGTATT-CTTCTTAAGAAGAAGAAAGTTCAT 15453 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGAC--CAGCC 119192 ||| || | ||||| || || ||||| | ||||| | ||||| || | || | ||| Sbjct 15454 GATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCACCCTTGCGCCTACCGCCGCC 15513 Query 119193 -TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 || | ||||| | || || || | ||||| |||||||| | | || | ||| Sbjct 15514 TTGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCACAAGGCCGTTGGA 15573 Query 119252 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC---TCTGACATCGTGGATGTGCAT 119308 | || || || ||| ||| | | | ||| | || | ||| | ||| || Sbjct 15574 TGTACCGTTCGTTCCCGCAAT---ATAACTCCCGGCACAGCGGATGTTGTGAACGTGGAT 15630 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 || ||||| || ||| | || |||| ||||||| | | || || ||||||| || Sbjct 15631 GCCGATACCACCAGCCGATTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGATGCC 15690 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGAGGCCTGGG 119425 || || |||| || |||| | ||||||| |||| ||| || || || Sbjct 15691 CTCAATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCT---CATCTGTGGTACTGG 15747 Query 119426 TGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTC 119485 ||| ||||||||||| || || ||||| ||||| | || | || | ||||| | || Sbjct 15748 TGTGCCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGAAGCCAAGAGACATATAATC 15807 Query 119486 GTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAA 119545 ||| || ||| ||| | ||||| | |||||||||||||| | || || | ||| Sbjct 15808 GTATGTTTCCTTCACGTGTTGCATGTCAGCACCGTGAATACCGATGGCAACACGAAGAAA 15867 Query 119546 CAT 119548 ||| Sbjct 15868 CAT 15870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618413005906760