Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq78 131 2e-25 seq62 114 2e-20 >seq78 Length=36107 Score = 131 bits (144), Expect = 2e-25 Identities = 174/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776 ||| | |||||| ||| | ||||| ||| | |||||||| | ||||| | |||||| Sbjct 13375 TTTCACGCCATCTCAACTATCCCGTGCATTGAGAAGAAAGCTAAGTGGGCAACTAAGTGG 13316 Query 94777 TTTGATACAAAGTCGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGG 94835 || | || ||| | ||||||||||| || |||| ||||| ||||||||| Sbjct 13315 ----ATCCGCAGCAGCGAGTGTTTTGCTGAGCGCCTTGTCGCGTTTGCCGCTGTTGAGGG 13260 Query 94836 TATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 94895 ||||||||||| || || |||||||| | | |||||||||||||| || |||||||| Sbjct 13259 CATCTTCTTCTCCGGCTCGTTCTGCGCGCTGTTCTGGCTCAAGAAGCGTGGCCTCATGCC 13200 Query 94896 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| || ||| ||| || || || || || |||||||| || ||| || ||||| Sbjct 13199 AGGGCTGACGTTCAGCAATGAACTCATTTCGCGCGACGAGGGCCTGCACACTGACTTTGC 13140 >seq62 Length=39022 Score = 114 bits (126), Expect = 2e-20 Identities = 560/879 (64%), Gaps = 29/879 (3%) Strand=Plus/Minus Query 104213 ATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATT 104272 || ||| ||||||| | ||||| | || || |||||||||||||| || | ||||| Sbjct 15888 ATCGAACGCCCACAGCATATGTTTCTTCGTGTTGCCATCGGTATTCACGGTGCTGACATG 15829 Query 104273 GATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCA 104332 | || ||| |||||||| | ||||| | || | || | ||||||||||| Sbjct 15828 CAACACGTGAAGGAAACATACGATTATATGTCTCTTGGCTTCTTTACGCACGCAACACCG 15769 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || || ||||| ||||| |||||| ||| || ||| | |||||||||| | || | Sbjct 15768 ACACTGTTCAACGCTGGCACACCAGTACCACAGATGAGCTCTTGCTTCCTTGTTGCAATG 15709 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||| ||| || | || ||||| | || || | | |||| || |||| || Sbjct 15708 CGGGATGACAGCATTGAGGGCATCTACGACACCCTAAAGCAGTGCGCCATAATCAGCAAA 15649 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGT---GAGAGCCAATAAATCTCGTATT 104509 | |||||| ||||| || || ||| | || | | | ||| | | |||| Sbjct 15648 TCGGCTGGTGGTATCGGCATCCACGTTCACAACATCCGCTGTGCCGGGA---GTTATATT 15592 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 ||| || || ||| ||| | || || | |||||||| || || | || || Sbjct 15591 GCGGGAACGAACGGTACATCCAACGGCCTTGTGCCAATGCTACGTGTGTGGAATAATACG 15532 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || || ||||| |||||| || || || ||||| | |||||| | || || ||| Sbjct 15531 GCACGTTATGTGGATCAAGGCGGCGGTAGGCGCAAGGGTGCGATCGCAATTTACCTAGAG 15472 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA------AGGTGAC 104680 || ||||| | || |||||| | || ||| | ||| || | ||| | Sbjct 15471 CCTTGGCATGGCGACATCATGAACTTTCTT------CTTCTTAAGAAGAATACGGGTAAG 15418 Query 104681 GAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAA 104739 || || || |||| || |||||||||| ||| || ||| |||| || || |||||| | Sbjct 15417 GAAGATATGC-GTGCGCGTGATCTCTTCTACGCGCTGTGGGTTCCTGACCTTTTCATGGA 15359 Query 104740 GAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTC 104799 | | || || || || || ||| | || | |||| ||| || ||||| | Sbjct 15358 GCGTGTGGAAAAGCATGAAAACTGGACGCTTATGGATCCACACACAGCGCCTGGGTTGAG 15299 Query 104800 CGATGCCGTGGGTGAGGAGTTTGAAGCCCTT-TACACAAAGTACGAGGAAGAAGGTCGGG 104858 |||| | || | || ||| ||| || ||| |||||| || || || | Sbjct 15298 CGATTGCTACGGCAACGA-TTTCAAGAAATTGTACGAGCGGTACGAAAGTGAGGGGCGCG 15240 Query 104859 CGACTG-CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAG 104917 | || || || || || |||||| || || || || | || | ||| Sbjct 15239 -GTGTGAAAACAATGAAGGCGCAGGAAGTGTGGTTTGCCATCCTTGAGACGCAGATGGAG 15181 Query 104918 ACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT 104977 || ||| || | | || | ||||| ||||| |||||| | ||| || || || || Sbjct 15180 ACGGGTGTGCCTTTCCTGGTGTACAAGGACGCATGTAACAAGAAGTCGAACCAGAATAAC 15121 Query 104978 TTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG-A 105036 | |||||||||||| |||| || || || || ||||| | |||| | | | | | Sbjct 15120 ATTGGTGTGATCAAGTGTTCAAACCTTTGCACGGAAATTGTCGAATACTC-GTCTCCGAA 15062 Query 105037 TGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC 105075 |||| || ||||| ||||| || ||||| ||||| || Sbjct 15061 AGAGATCGCAGTGTGCAACCTTGCGTCAATTGCTCTGCC 15023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583239868228040