Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq120 113 1e-19 >seq120 Length=30378 Score = 113 bits (124), Expect = 1e-19 Identities = 222/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| ||||| || | || | ||||| | || | |||| ||| | || Sbjct 25503 AAGATGAAGGAGATTGCGGAGACCTACCTTGGTGAGAAGGTGAAGAATGCCGTTGTGACG 25444 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || || || || ||||| | || ||||| ||||| | |||||| Sbjct 25443 GTGCCCGCGTACTTCAACGACGCACAGCGGCAGTCGACCAAAGACGCTGGTACGATTGCG 25384 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 ||||| ||||| | | || || || || || || || || || || || || ||||| Sbjct 25383 GGGTTGAATGTCGTGCGTATCATCAACGAGCCGACGGCCGCCGCCATCGCGTACGGGCTG 25324 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 | || | | || || || |||||| | || || | ||||||||||| || Sbjct 25323 AACAAG------GCCGGCGAGAAGAACATTCTTGTGTTCGACCTCGGTGGTGGTACCTTC 25270 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || || ||| |||| ||||| | ||||| ||| ||||| ||||| Sbjct 25269 GATGTGTCGCTTCTGACAATTGACGAGGGCTTCTTTGAGGTTGTGGCAACGAACGGTGAC 25210 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || ||||| || || ||||| || || Sbjct 25209 ACGCACCTTGGCGGTGAGGATTTCGACAA 25181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515198661840413