Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq62 187 3e-42 seq828 82.4 8e-11 >seq62 Length=39022 Score = 187 bits (206), Expect = 3e-42 Identities = 466/691 (67%), Gaps = 20/691 (3%) Strand=Plus/Minus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCAC--CCTCAGATGTCG 53329 |||||||||||| || || || |||||||||||||| || | || || |||||| Sbjct 15787 CTTTACGCACGCAACACCGACACTGTTCAACGCTGGCAC--ACCAGTACCACAGATG--- 15733 Query 53330 AGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 |||| ||||||| || || ||| ||||||| || || ||||||||||| || || Sbjct 15732 AGCTCTTGCTTCCTTGTTGCAATGCGGGATGACAGCATTGAGGGCATCTACGACACCCTA 15673 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTC-GAACGT 53445 ||| |||| ||| ||| ||| | | | ||||||||||| |||||| | || ||| | Sbjct 15672 AAGCAGTGCGCCATAATCAGCAAATCGGCTGGTGGTATCGGCATCCAC-GTTCACAACAT 15614 Query 53446 CCG-TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||| || | ||| | || ||| |||||||| || | || | ||||| | Sbjct 15613 CCGCTGTG-CCGGGAGTTATATTGCGGGAACGAACGGTACATCCAACGGCCTTGTGCCAA 15555 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| || || | || || ||||| || || || | || || || || | |||||||| Sbjct 15554 TGCTACGTGTGTGGAATAATACGGCACGTTATGTGGATCAAGGCGGCGGTAGGCGCAAGG 15495 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 | || |||| || ||||| ||||| ||||| | |||||| ||| | ||||| || Sbjct 15494 GTGCGATCGCAATTTACCTAGAGCCTTGGCATGGCGACATCATGAACTTTCTTCTTCTTA 15435 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGAT 53682 |||| |||| | ||||| ||||| ||| ||||| || || ||| || |||||| | Sbjct 15434 AGAAGAATACGGGTAAGGAAGATATGCG-TGCGCGTGATCTCTTCTAC-GCGCTGTGGGT 15377 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 ||| ||||| |||||| | ||||| ||| | || | ||| || ||| || | Sbjct 15376 TCCTGACCTTTTCATGGAGCGTGTGGAAAAGCATGAAAACTGGACGCTTATGGATCCACA 15317 Query 53743 CGAGTGCCCCGGCCTCCAG-GGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGT 53801 | | || || | | || | | |||||| | || || || | |||| | || Sbjct 15316 C-ACAGCGCCTGGGTTGAGCGATTGCTACGGCAACGATTTCAAGAAATTGTACGAGCGGT 15258 Query 53802 ACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCC 53861 ||| | | |||| ||| ||| | | ||||||| || || ||| ||| |||| Sbjct 15257 ACGAAAGTGAGGGGCGCGGTGTGAAAACAATGAAGGCGCAGGAAGTGTGGTTTGCCATCC 15198 Query 53862 TCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGA 53921 | ||| ||| |||||||||| ||| | | || |||||||| | ||| ||| Sbjct 15197 TTGAGACGCAGATGGAGACGGGTGTGCCTTTCCTGGTGTACAAGGACGCATGTAACAAGA 15138 Query 53922 AGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 || |||||||| ||||| || || ||||| Sbjct 15137 AGTCGAACCAGAATAACATTGGTGTGATCAA 15107 Score = 111 bits (122), Expect = 2e-19 Identities = 305/454 (67%), Gaps = 19/454 (4%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | || ||||| ||||| || || ||||||||||||||||| || | ||||| | Sbjct 14601 GGCATGCGGAACTCTCTGCTGGTAGCACCAATGCCAACCGCGTCAACCTCGCAGATTCTT 14542 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCT-AGC 55596 ||||| ||||| |||||||| | ||| | |||||||| | || || || ||| Sbjct 14541 GGCAATAACGAATGCTTCGAGCCATTCACATCGAACATCTATGTTCGTCGCGTGCTGAGC 14482 Query 55597 AGGTGAGTT---TGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAA 55653 |||||||| ||| || | || ||| | ||||| | ||| || |||| ||| Sbjct 14481 -GGTGAGTTCCCTGT--TGTT-AATAAGTATCTCGTGATGGATCTCATAAAGAGAAACCT 14426 Query 55654 GTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCT--- 55710 ||||| | |||| | | ||| | || | || || || ||||| | Sbjct 14425 GTGGAGCGATGAGATGCGCAACCAGATTATCGCCAATGACGGCTCGGTGCAGAAGATCAA 14366 Query 55711 GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 || ||| || || |||||| | ||| ||||||||| || ||| ||| Sbjct 14365 GGCGATCCCGGACGACCTGAAGGAGCTGTACAAAGTGGTGTGGGAAATCAAGCAGC-GAG 14307 Query 55771 -TCTGATTGACATG--AGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 ||| ||||||||| |||| || || || |||||| |||||| ||| ||||| Sbjct 14306 ATCTTATTGACATGGCAGTG--GACCGCGGCAAGTACATTGACCAGAGTCAGAGCCTGAA 14249 Query 55828 CATCTTCATGGAGAATCCTTCA-CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGA 55886 | | || | |||| ||| | ||||||| | ||| ||||||||||| |||| ||||| Sbjct 14248 CCTGTTTCTTGAGAGCCCTACCTCTGGCCA-GCTGACGTCGATGCACTTCTACGCGTGGA 14190 Query 55887 AGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 | || || ||||||||||| ||||||| || || Sbjct 14189 AAAAAGGCCTCAAGACGGGCGTGTACTACCTACG 14156 >seq828 Length=7585 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/212 (71%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 152921 TCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGC 152980 |||| | |||| ||| || || || || || ||||||| || ||||| ||||| || | Sbjct 4238 TCACTTTCTTCAGCGTCGCGTCACGGACGTTAAGCGGCTTGCCGCGGAGCGGAAAAACAC 4179 Query 152981 CGAACGCGTTGCGG-CCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCA 153039 |||| || ||| ||| | ||| || ||||| || || || || || ||||| Sbjct 4178 CGAAGTAGTCACGGTCCTTTACCGCG-AGTCCGGCGGTACAGAGCGCCTTGGCGGAGTCT 4120 Query 153040 CCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGA--TGAGTACCGGCCCAGTTGGCGT 153097 |||||||||| || || || || ||| | ||||| | ||| ||| |||||||| Sbjct 4119 CCCTCGGTGAGGATGAGGGTGCA-TCG-GTGACCGTACTTCCCACCCGCCTCGTTGGCGT 4062 Query 153098 CGTCAAGCTTGGGGATTCCCGTGATCCTGCTT 153129 |||||||||| ||||| || ||| |||||| Sbjct 4061 CGTCAAGCTTCGGGATGCCGAGGAT-CTGCTT 4031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196361785800