Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq137 170 2e-37 seq828 125 8e-24 seq155 125 8e-24 seq1753 102 9e-17 seq62 98.7 1e-15 >seq137 Length=29121 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || | || ||||| ||| | || Sbjct 22512 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCTAGT 22571 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || ||||||||||||||||| || || || |||||| Sbjct 22572 GACACCATTGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 22631 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| ||||| || | || || || || ||||| ||| Sbjct 22632 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGAGGGCCGCACGCTGGCGGACTACAAT 22691 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || || || | ||||| || ||||| Sbjct 22692 ATCCAGAAGGAATCGACGCTGCACCTTGTGCTCCGTCTCCGTGGTGG 22738 >seq828 Length=7585 Score = 125 bits (138), Expect = 8e-24 Identities = 300/450 (67%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || ||| | ||| || || ||||| |||||||||| | || | Sbjct 4946 AGCGTTCCATCCCGAGCGTTGTGGATGGGCTGAAGCCCGGACAGCGCAAGATCATGTTTT 5005 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||| | ||| ||||| || | ||| ||||||| ||| || | || ||||| Sbjct 5006 CCTCGTTTAAGCGCAACCTCACGCGATCCATTAAGGTGGTGCAACTAGCCGGTTACGTCT 5065 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||||| |||| || |||||||||||| |||||| | ||||| || ||| | Sbjct 5066 CTGAGCACGCGGCGTACCACCACGGCGAGCAGTCGCTGGTGCAGACCATCGTTGGCCTCG 5125 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | || |||| || || | ||||| || | ||| ||| || |||||||| | Sbjct 5126 CACAAGACTTCGTGGGCTCGAATAATGTGCCGCTGCTCCAGCAGGACGGTCAGTTTGGTA 5185 Query 32201 CCCGGCTCGCCGGTGGCAAGG---ATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCG 32257 | ||||| || ||||||| | |||||| | |||||||||||||||||| |||| Sbjct 5186 CACGGCTGCAGGGCGGCAAGGACCACGCTGCGGG---CCGTTACATCTTCACCCGCCTCG 5242 Query 32258 C-ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTT 32316 | | | ||| |||| | |||| | |||| ||||| || || | | ||||| | Sbjct 5243 CAAACATCG-CGCGGTACATTTACCACCCCTCGGATGACTACGTCGTGGACTACAAGGAT 5301 Query 32317 GATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTG 32376 || ||||| | ||| || || | | ||| |||||| | || ||| | ||||| Sbjct 5302 GACGACGGGTTGTCGGTAGAACCCTTCTACTATGTGCCGGTGATCCCAATGGTGCTGGTG 5361 Query 32377 AACGGTGCAGAAGGCATCGGAACGGGGTTC 32406 ||||| | |||||||| ||||| ||| Sbjct 5362 AACGGCACCTCCGGCATCGGGACGGGCTTC 5391 >seq155 Length=27196 Score = 125 bits (138), Expect = 8e-24 Identities = 221/325 (68%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 24585 GAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTAC 24644 ||||| || ||||| | || ||||| ||||| ||| | || |||||| ||||||||| Sbjct 4332 GAGGTGTACAACCTCGCCGCACAGTCGCACGTGAAGGTCTCTTTTGACACGCCCGAGTAC 4391 Query 24645 AC--GGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNN 24702 || ||| ||| ||||| | || || || | || || || || || ||| Sbjct 4392 ACTGGGCAGACG--GATGCCATGGGGACGCTGAAGATCCTCGACGCGATCCGCGCCAACG 4449 Query 24703 NNNNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGC 24762 || | | | || || ||||| | || |||||| ||| |||||||||| Sbjct 4450 GCTTGGAGAAGACGTGCCGCTTCTACCAGGCAAGCACAAGTGAGCTGTACGGCAAGGTGC 4509 Query 24763 AGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAA 24822 ||||| ||| |||||||||| || || || |||||||| || || |||| || | | Sbjct 4510 AGGAGGTGCCGCAGTCGGAGAAGACGCCCTTCTATCCGCGCAGTCCATATGCTGTGGCGA 4569 Query 24823 AGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCA 24882 || | | || | |||||| || ||||||||||||| | ||| || | ||| |||| Sbjct 4570 AGCTCTATGCCTTCTGGATGACGGTGAACTACCGTGAGTCATATGATATGTTTGCGTGCA 4629 Query 24883 ACGGAATTCTGTTCAACCATGAGTC 24907 |||| || ||||| || || || || Sbjct 4630 ACGGTATCCTGTTTAATCACGAATC 4654 >seq1753 Length=2219 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || || |||||||| || |||||||| || | || ||||| ||| | Sbjct 2094 ATCATGCAAATTTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCC 2153 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||||| || ||||||| || ||||||||||||||||| || || || ||| Sbjct 2154 AGCGACACCATTGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGAC 2213 Query 27523 CAGCAG 27528 |||||| Sbjct 2214 CAGCAG 2219 >seq62 Length=39022 Score = 98.7 bits (108), Expect = 1e-15 Identities = 560/872 (64%), Gaps = 50/872 (6%) Strand=Plus/Plus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 ||||| || |||||||| || | ||||| | | | | ||||| ||||||||||| Sbjct 15035 GACGCAAGGTTGCACACTGCGATCTCTTTCGGAGACGAGTATTCGACAATTTCCGTGCAA 15094 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | || ||| |||| || ||| | ||| |||||||| ||||| ||| || |||||| Sbjct 15095 AGGTTTGAACACTTGATCACACCAATGTTATTCTGGTTCGACTTCTTGTTACATGCGTCC 15154 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| || | | || ||| ||||| | ||| | || |||||||| ||| | Sbjct 15155 TTGTACACCAGGAAAGGCACACCCGTCTCCATCTGCGTCTCAAGGATGGCAAACCACACT 15214 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG-GCCACATACTTGGCGTAAGCTTC 81146 || ||||||| | ||| ||| | || ||| | |||| |||| || Sbjct 15215 TCCTGCGCCTT-----CATTG----TTTTCACACCGCGCCCCTCACTT-TCGTACCGCTC 15264 Query 81147 GTCGAA---CTTGGCACCGT----GAAG--TTCAGTGAGGTCTGGGCACT-CGTTAGGGC 81196 || || |||| | ||| | || || | | | ||| || || || Sbjct 15265 GTACAATTTCTTGAAATCGTTGCCGTAGCAATCGCTCA-ACCCAGGCGCTGTGTGTGGAT 15323 Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGA 81256 ||| || ||||| | || || ||| || ||||||| |||||| | ||| | Sbjct 15324 CCATAAGCGTCCAGTTTTCATGCTTTTCCACACGCTCCATGAAAAGGTCAGGAACCCACA 15383 Query 81257 GGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315 | ||| ||| || || || ||| ||| || || | |||| | | | || | Sbjct 15384 GCGCGTAGAAGAGATCACGCGCA-CGCATATCTTCCTTACCC-GTATTCTTCTTAAGAAG 15441 Query 81316 -AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG 81374 ||||||| ||||||||| ||||||| ||||| || || | ||||||| |||||||| Sbjct 15442 AAGAAAGTTCATGATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCACCCTTGCG 15501 Query 81375 ---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431 || ||| || || | || ||||| || || || | ||||| | ||| || | Sbjct 15502 CCTACCGCCGCCTTGATCCACATAACGTGCCGTATTATTCCACACACGTAGCATTGGCAC 15561 Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGC---GCGCACCTT 81488 | || | || ||||||||| ||| | ||| | | | ||| ||| | || Sbjct 15562 AAGGCCGTTGGATGTACCGTTCGTTCCCGCAATA---TAACTCCCGGCACAGCGGATGTT 15618 Query 81489 GCTGA--TTGAAAGACCGATGCCACCTGACCACTTTG--AAATCTGAGCACACCGGTTCA 81544 | ||| || | | ||||| ||||| | || |||| | | || || ||| | || | Sbjct 15619 G-TGAACGTGGATG-CCGATACCACCAG-CCGATTTGCTGATTATG-GCGCACTGCTTTA 15674 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCAT---GTCAAGCAAGAAACAGCTTG 81601 ||| || || || ||||| ||||| || | ||| |||| ||| || |||| Sbjct 15675 GGGTGTCGTAGATGCCCTCAATGCTGTCATCCCGCATTGCAACAAGGAAGCAAGAGCT-- 15732 Query 81602 ACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 |||||| || | || ||| || ||||||||||| || || ||||| | || | | Sbjct 15733 -CATCTGTGGTACTGGTGTGCCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGAAGC 15791 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721 ||||| || || |||||||| ||| || | || || ||||||||||||||| Sbjct 15792 CAAGAGACATATAATCGTATGTTTCCTTCACGTGTTGCATGTCAGCACCGTGAATACCGA 15851 Query 81722 TAGCTACACGCATAAACATGTACTG-GGGCGT 81752 | || ||||| | |||||| | ||| |||||| Sbjct 15852 TGGCAACACGAAGAAACATATGCTGTGGGCGT 15883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570289932985520