Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1674 143 2e-29 >seq1674 Length=2441 Score = 143 bits (158), Expect = 2e-29 Identities = 382/570 (67%), Gaps = 18/570 (3%) Strand=Plus/Minus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTT-CTAGCCCGGTGACGT 29954 ||| ||||| || || || || |||| || | ||| ||||| | | |||| | | | Sbjct 2255 GTACACGTGCGCATCGCCGAGCGTGTGCACCAGCTCGCCCGGCCGCAATCCCGCCGCCTT 2196 Query 29955 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 30014 ||||| | | ||| || || | ||| |||||||| || || || ||||| |||| Sbjct 2195 C-GCCATGAGGATCGTCAGCAGCGCGTACGACGCGATGTTGAACGGCACGCCGAGGCCCA 2137 Query 30015 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC 30074 |||| | ||| | |||||| ||| || |||||||| |||| | || |||| ||||| Sbjct 2136 TGTCGCACGAGCGCTGGTACAGCATGCAGGAGAGCTCGCCGTTGTTCGCGTAGAACTGCG 2077 Query 30075 ACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 30134 | | ||||||||| || || ||||| | || | |||||||| ||| | Sbjct 2076 CGAGGAGGTGGCACGGTGGGAGCGCCATCGCGTGCAGCGCGCACGGGTTCCACGCGGTGA 2017 Query 30135 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG---CT 30191 || ||||||| ||| || ||||| | || || | | || | ||| | || Sbjct 2016 GTATCATGCGCCGGTCATCGGGGTT---CGTGCGCAGCGTCTCTACGATCTGCCGGATCT 1960 Query 30192 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTC-CGTGTACTCTGCTCCGAAATGC 30250 | || | || |||| |||||||| | | || || | ||||||| | || ||||| || Sbjct 1959 GGTCGATGCCATTCCCGGAGTAGTC-GTCGTCGTGCCGCGTGTACGCCGCGCCGAAGTGT 1901 Query 30251 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC-CT 30309 | ||||||||| ||||||||||| || ||||| ||| || || | | ||||| | Sbjct 1900 CGCCACTGGAAGCCGTACACCGGGCCAAGGTCCATCTCCTCGTAGT-CGTGCAGCCCGCG 1842 Query 30310 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAG 30369 |||| | ||| | | || |||||| || |||||| | || ||||| || || Sbjct 1841 GCTGTCGAGGAAGGCGCGCGAGCCGTTGTCGCTCCAGATGTGCACGCCCTTGTCGCTCAG 1782 Query 30370 CTCTTTGGAGTT--TGTGGACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTT 30426 | || | ||| | ||| | | | || ||||||||||||||||| ||| ||| | Sbjct 1781 CAGCTTCGCGTTCGTCTGGCCGCGCAGA--AACCACAGCAGCTCCTCGCAC-ACGCCGCG 1725 Query 30427 CCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||| ||||| | ||| ||||| || || || Sbjct 1724 CCAGAAGACGCGCTTCGTCGTCAGCAGCGG 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406296183072132